Serratia plymuthica 4Rx13: SOD_c01160
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Entry
SOD_c01160 CDS
T02710
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOD_c01160 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srl03021
]
SOD_c01160 (rho)
03019 Messenger RNA biogenesis [BR:
srl03019
]
SOD_c01160 (rho)
Transcription machinery [BR:
srl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SOD_c01160 (rho)
Messenger RNA biogenesis [BR:
srl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SOD_c01160 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
S1CSD-TOTE-2
AAA_22
OB_RNB
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AGO53150
LinkDB
All DBs
Position
140347..141606
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgtatgcgcaagcaggacattatcttctccatccttaag
cagcatgcgaaaagtggagaagatatcttcggcgatggcgtgttggagatattgcaggat
ggatttggtttcctccgctctggagacagttcctaccttgcaggccccgacgacatctac
gtatcccctagccaaatccgccgtttcaacctccgtacaggtgactccgtttccggtaag
attcgtccgccaaaagaaggcgagcgctattttgccctgttgaaagtcaacgaagtcaac
tacgacaaaccggaaaacgcccgcagcaagatcctgttcgagaacttaaccccactgcat
gccaactcccgtctgcggatggaacgcggcaacggttcaaccgaagacctgacagcccgc
gtgctggacctggcttctccgattggccgtggtcagcgtggtctgattgttgctccaccg
aaagccggtaaaaccatgctgctgcagaacattgcgcaaagcatcgcttacaaccatcca
gactgcgtgctgatggtgctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgtctggtgaagggtgaagtcatcgcctctacctttgacgagccggcttcccgtcacgtc
caggttgcggaaatggtgatcgaaaaggccaagcgcctggttgagcacaagaaagacgtt
atcatccttcttgactccatcacccgtttggcgcgtgcctacaacaccgtggtcccggct
tccggcaaagtgctgaccggtggtgtggatgccaacgccctgcatcgtcctaagcgtttc
ttcggtgcggcacgtaacgttgaggagggcggtagcctgaccatcatcgctaccgcgctg
gtagataccggttccaaaatggacgaggttatctacgaagagttcaaaggtaccggcaac
atggaattgcatctggcgcgtaaaatcgccgagaagcgcgtattccctgcgatcgactac
aaccgctccggtacccgtaaagaagagttactcaccacgtctgaagaactgcaaaaaatg
tggatcctgcgtaaaatcattcacccgatgggcgagattgatgcgatggagttcctcatt
aacaagttggccatgaccaagaccaacgatgaattcttcgatatgatgaagcgctcataa
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