Serratia plymuthica 4Rx13: SOD_c02120
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Entry
SOD_c02120 CDS
T02710
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl00071
Fatty acid degradation
srl00280
Valine, leucine and isoleucine degradation
srl00310
Lysine degradation
srl00362
Benzoate degradation
srl00380
Tryptophan metabolism
srl00410
beta-Alanine metabolism
srl00640
Propanoate metabolism
srl00650
Butanoate metabolism
srl00907
Pinene, camphor and geraniol degradation
srl00930
Caprolactam degradation
srl01100
Metabolic pathways
srl01110
Biosynthesis of secondary metabolites
srl01120
Microbial metabolism in diverse environments
srl01200
Carbon metabolism
srl01212
Fatty acid metabolism
Module
srl_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
SOD_c02120 (fadB)
00650 Butanoate metabolism
SOD_c02120 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
SOD_c02120 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SOD_c02120 (fadB)
00310 Lysine degradation
SOD_c02120 (fadB)
00380 Tryptophan metabolism
SOD_c02120 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
SOD_c02120 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SOD_c02120 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SOD_c02120 (fadB)
00930 Caprolactam degradation
SOD_c02120 (fadB)
Enzymes [BR:
srl01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
SOD_c02120 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
SOD_c02120 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
SOD_c02120 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
SOD_c02120 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Motif
Other DBs
NCBI-ProteinID:
AGO53242
LinkDB
All DBs
Position
complement(241136..243325)
Genome browser
AA seq
729 aa
AA seq
DB search
MLYQGETLQLHWLDNGIAELVFNAPGSINKLDTRTVASLGEALDVLEKQTELKGLLVRSS
KAAFIVGADITEFLSLFAAPAEKLHQWLAFANATFNRLEDLPVPTISAINGYALGGGCEC
ILATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDALK
VGLVDAVVAPEKLVEAALKMLQQAIDGHLNWRAYRQPKLDPLKLSPIEAAMSFTTAKGMV
LQTAGKHYPAPMTAVKTIEAAAKLGRDEALKLETASFVPLARSNEARALVGIFLNDQFVK
SQAKKLAKNAEAPKQAAVLGAGIMGGGIAYQSALKGVPVIMKDISDKSLALGMNEAAKLL
NKQLERGKLDGMKMAQVLSTIQPTLDYAGIERAQVIVEAVVENPKIKAAVLSEVEGLIGE
DTVLASNTSTIPINHLAKSLKRPQNFCGMHFFNPVHRMPLVEIIRGEQTSDNTIAAVVAY
ATRMGKTPIVVNDCPGFFVNRVLFPYFAGFSMLLRDGVDFRQIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPERMGKDYRDAIDVMFDNQRFGQKNQLGFYRYSQDNKGKP
RKDNDEQTDALLAAVSQPRQTISDEEVIARMMIPMINEVVRCLEENIIASPAEADMALVY
GIGFPPFHGGAFRYLDTLGTANYVELAQRYAHLGALYQVPAGLRAKAERNESYYPVATPL
SDIATGQPA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctctaccaaggcgaaacattacaactgcactggctcgataacggcatcgccgagttg
gtgttcaatgccccaggctcgataaacaagctggatacccgcaccgttgccagcctgggc
gaagcgctcgacgtactggaaaaacagaccgagctgaaagggctgctggtgcgttccagc
aaggccgcgtttattgtcggtgccgatatcaccgaattcctttcactgttcgcggccccg
gctgaaaaactgcaccaatggctggccttcgccaacgcaacctttaaccgactggaagat
ctgccggtaccgaccatttcggccattaacggctatgcgctcggtggcggctgcgaatgc
attctggccaccgacttccgggtcgcttctcccgatgctcgcattggcctaccggaaacc
aagctgggcattatgccgggcttcggcggttccgttcgcttgccacgcctgttgggtaac
gacagcgcgctggagattatcgccgccggtaaagacgtcagcgccaaagacgcgctgaag
gtcggtctggtggatgcggtggtcgcaccggagaaattggtagaagccgcgctgaaaatg
ctgcaacaggctattgacggtcatttgaactggcgtgcctatcgtcaaccgaaactcgat
ccgttgaaactcagcccaatcgaagcggccatgagcttcaccaccgccaaaggcatggtg
ctgcaaaccgcaggcaaacattatccagcgccgatgaccgcggttaaaaccatcgaagcc
gccgctaaattgggccgcgatgaagccttgaaattggaaaccgccagctttgtgcctttg
gcgcgttccaacgaagcgcgcgcactggtcggtatcttcctcaacgatcagtttgtgaaa
agccaggcgaaaaagctggccaaaaacgcggaagcgccgaagcaggctgcggtattgggc
gcaggcattatggggggcggcatcgcttaccagtcagcgctgaaaggcgtgccggtgata
atgaaagacatcagcgacaaatccctggcgctcggcatgaacgaagccgccaaactgctg
aacaaacagctggagcgcggcaagctggacggcatgaagatggcgcaggtgctgtcgacc
attcagccgacgctggattatgccggtatcgaacgcgcgcaggtgatcgttgaagccgtg
gtcgagaatccgaagatcaaagcggcagtgttgtccgaggtggaaggtctgatcggtgaa
gacacagtgctggcatccaatacctcgaccattccgattaatcacctggcaaaatcactg
aaacgcccgcaaaacttctgtggcatgcacttctttaacccggtacaccgcatgccgctg
gtggaaatcatccgcggcgagcagaccagcgacaacaccatcgccgccgtagtggcctac
gccacccgcatgggcaaaacaccgatcgtggtcaacgactgcccggggttcttcgtcaac
cgcgtactgttcccctattttgccggctttagcatgctgctgcgcgatggggtggatttc
cgccaaatcgataaggtaatggaaaaacagtttggctggccaatgggcccggcttacctg
ctcgacgtggtggggatcgataccgcgcaccatgcccaggcggtaatggcggccggtttc
cctgagcgtatgggcaaagattatcgcgacgccattgacgtgatgttcgacaaccaacgt
tttggtcagaaaaaccaactgggtttctaccgttacagtcaggacaacaaaggcaagccg
cgtaaagacaacgatgagcagaccgatgcgctgttggccgccgtctcccagccacgccag
accatcagcgatgaagaagtcatcgctcgaatgatgatcccgatgatcaacgaagtggtg
cgctgcctggaagaaaacatcatcgccagcccggctgaagccgatatggcgttggtttac
ggcatcgggttccctccgttccacggtggggcgttccgttacctggatacgcttggcacc
gcaaactatgtcgaactggcccagcgttacgcacatcttggcgctctgtatcaagtgcct
gccggcctgcgcgccaaagctgaacgcaatgaaagctactacccggtggcgacgccattg
tccgatatcgccactggccaaccggcatga
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