Serratia plymuthica 4Rx13: SOD_c03690
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Entry
SOD_c03690 CDS
T02710
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOD_c03690 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srl03019
]
SOD_c03690 (pnp)
03016 Transfer RNA biogenesis [BR:
srl03016
]
SOD_c03690 (pnp)
Enzymes [BR:
srl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SOD_c03690 (pnp)
Messenger RNA biogenesis [BR:
srl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SOD_c03690 (pnp)
Transfer RNA biogenesis [BR:
srl03016
]
Prokaryotic type
tRNA degradation factors
SOD_c03690 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
aRib
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
UPF0181
Motif
Other DBs
NCBI-ProteinID:
AGO53380
LinkDB
All DBs
Position
401300..403360
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AA seq
686 aa
AA seq
DB search
MMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRRE
GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS
GIPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVLMVESEADVLSEDQM
LGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVAELAESRLGDAYHIT
EKQERYAQVDAIKSSVVEALLAQDESLDASEIQDILGSVEKNVVRSRVLRGEPRIDGREK
DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFLFHYN
FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGSSSMA
SVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDHLGDMDFKVAGSRDG
ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISQFAPRIHTIRIN
PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEV
GRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR
QGRVRLSIKEATAPEAGSSAPAPEAE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgatggctcgtcaggccaccgccgccgttatggtgagcatggatgacaccgcagtattc
gttaccgtagttggccagaaaaaagccaagccaggccaaagcttcttcccactgaccgtt
aactatcaggagcgtacttacgctgctggtcgtatcccgggcagcttcttccgtcgtgaa
ggccgtccgagcgaaggcgaaaccctgacctcacgcctgattgaccgtccgatccgtcca
ctgttcccggacagcttcctgaatgaagtgcaagtgatcgcgaccgtagtttccgttaac
ccgcaggtaaacccggacatcgttgcgatgatcggcgcttctgctgccctgagcctgtcc
ggtattccgttcaacggcccaatcggcgctgcacgcgtgggttacatcaacaatcagtac
gtgctgaacccaacgaccgacgagctgaaagaaagcagcctggacttggtggttgccggt
accgctggcgcagtgctgatggttgaatccgaagctgacgttctgagcgaagatcagatg
ctgggcgctgtggtctttggccatgagcaacagcagattgttatcgaaaacatcaactcc
ctggttgccgaagccggtaagcctaagtgggactggcaggcacctgcaatcaacgaagcg
ctgcacgcgcgcgttgcagaactggcagaaagccgtctgggcgacgcttatcacatcacc
gaaaaacaagagcgttacgctcaggtagatgcgatcaagagcagcgtagttgaagccctg
ctggcgcaggacgagagcctggacgcgtctgaaattcaggacatcctgggcagcgttgag
aaaaacgttgtacgtagccgcgtgctgcgtggcgagccgcgtatcgacggccgtgaaaaa
gacatgattcgtggtctggacgtgcgcaccggcgtgctgccgcgtacccacggttccgca
ctgttcacccgtggcgagactcaggctctggttactgcaacgctgggcaccgcccgtgac
gcgcaaaacctggacgagctgatgggtgagaaaaccgacagcttcctgttccactacaac
ttccctccgtactccgtaggtgagaccggtatggtgggttcgcctaaacgtcgtgaaatt
ggtcacggtcgcctggcgaaacgcggtgtattggctatgatgcctaaaccagaagatttc
ccgtacacggtgcgtgtggtttccgagatcaccgaatccaacggttcttcttcaatggct
tctgtctgcggtgcctctctggcgctgatggacgcaggcgtgccaatcaaggcagccgtt
gcgggtatcgcaatgggcctggttaaagaacaagataactttgtcgttctgtccgacatt
ctgggtgacgaagatcacttgggcgacatggacttcaaagtagccggtagccgtgacggt
attaccgcgctgcagatggacattaaaattgaaggcatcacccgcgaaatcatgcaggtg
gcactgaaccaggccaagggcgcgcgtctgcacatcctgggcgtgatggaacaggctatc
agcaccccgcgtggcgatatctctcagttcgcaccacgtatccacactatccgaatcaac
ccggacaagatcaaagacgtgatcggtaaaggcggctctgtcatccgtgcgctgaccgaa
gagaccggtactaccatcgaaatcgaagatgatggtacggttaaaattgctgctaccgac
ggtgagaaagccaagttcgctatccgccgcatcgaagagatcaccgcagagatcgaagtg
ggccgtatttaccaaggtaaagtgacccgtatcgttgatttcggtgcattcgtggcgatc
ggcggcggtaaagaaggtctggtgcacatctctcaaatcgctgacaagcgcgttgagaaa
gtgaccgactatctgcagatgggtcaggaagtaccggttaaggtactggaagttgaccgt
cagggccgtgtgcgtctgagcatcaaagaagctacagcgccagaagcaggttcatctgca
cctgcgcctgaagcagaataa
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