Serratia plymuthica 4Rx13: SOD_c03710
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Entry
SOD_c03710 CDS
T02710
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOD_c03710 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srl03019
]
SOD_c03710 (deaD)
03009 Ribosome biogenesis [BR:
srl03009
]
SOD_c03710 (deaD)
Enzymes [BR:
srl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOD_c03710 (deaD)
Messenger RNA biogenesis [BR:
srl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOD_c03710 (deaD)
Ribosome biogenesis [BR:
srl03009
]
Prokaryotic type
rRNA helicases
SOD_c03710 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AGO53382
LinkDB
All DBs
Position
404561..406528
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AA seq
655 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDMYRALLAKLQPEEELEME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGSDRGNDRRRDARPDSRDGGAE
RPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELP
KGMPGEILSHFTRTRILNKPMNMQLLGDAQPHERRERREGGAPGAGGERRGGARPFNGER
REGAGAPRRSFSERREGGAPAATGERRGNASRDGQRAPRRDDAAPAAPRRRFGDA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctcctatcatttct
gccctgaccgatctgggctacgaaaaaccgtcaccgatccaggctgagtgtattcctcac
ctgttgaacggccgtgatgtgctgggcatggcacagaccggtagcggtaaaactgcagcg
ttctcgctgccactgctgcacaaccttgacgcttccctgaaagcaccacagattctggtg
ctggcaccgacccgcgaactggcggttcaggttgctgaagcgatgactgatttctctaaa
catatgactggcgttaacgttgttgccctgtacggcggccaacgttacgacgtacagctg
cgcgccttgcgtcagggcccacaaatcgtagtgggtaccccaggccgtctgctggaccac
ctgaaacgcggcacgctgaacctctctaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggcggagatcccggct
gaacatcagaccgcgctgttctccgcaaccatgccggaagcgatccgtcgcattacccgt
cgcttcatgaaagatccgcaggaagtgcgcattcagtccagcatcactacccgtccggac
atcagccagagctactggactgcgcaaggcatgcgcaagaacgaagcgctggtgcgtttc
ctggaagctgaagactttgatgcggcgatcatcttcgtgcgtaccaaaaacgcgaccctg
gaagtggctgaagcgctggagcgcagcggttacagcagcgccgcactgaacggtgacatg
aaccaggcactgcgtgagcagaccctggagcgtctgaaagacggtcgtctggatatcctg
atcgctaccgacgttgccgctcgtggtctggacgttgagcgtatcagcctggttgtgaac
tacgacatccctatggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgct
ggtcgcgccggccgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgaccattccagaagttgagctgccaaatgcagagctgctg
ggtgagcgtcgtctggccaagttcgccgctaaagtacagcaacagctggaaagcagcgat
ctggacatgtaccgcgcactgctggctaaactgcagccggaagaagagctggaaatggaa
accctggccgcagcactgctgaaaatggcgcagggcgaacgtcctctgattctgccaccg
gatccggtgttcaaaccgcgtcaacgtcgtgagttcaacgaccgtgacgatcgtggttct
gatcgtggcaacgaccgtcgccgtgacgcgcgtccagacagccgtgacggtggtgccgag
cgtccacgtcgcgaacgtcgtgacgttggcgaaatgcagctgtaccgcattgaagtgggc
cgtgatgacggtgtggaagttcgtcatatcgttggcgcgatcgctaacgaaggcgacatc
agcagccgttacatcggtaacatcaagctgtttgccggccactccaccatcgaactgcca
aaaggcatgccgggcgagatcctgtctcacttcacccgtacccgcatcctgaacaagccg
atgaacatgcaattgctgggcgatgcacagccgcatgaacgtcgtgagcgtcgcgaaggc
ggtgctccaggtgcaggtggcgagcgtcgtggcggtgctcgtccgttcaacggcgaacgt
cgtgaaggtgccggcgcaccgcgtcgttctttcagtgagcgtcgcgaaggcggtgctcca
gctgcaactggcgaacgtcgtggcaacgccagccgtgacggtcaacgcgcaccgcgtcgt
gatgatgccgctccggctgcaccacgtcgccgtttcggtgatgcataa
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