Serratia plymuthica 4Rx13: SOD_c08910
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Entry
SOD_c08910 CDS
T02710
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srl03400
]
SOD_c08910 (sbcC)
DNA repair and recombination proteins [BR:
srl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SOD_c08910 (sbcC)
Archaeal homologous recombinant proteins
SOD_c08910 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
nSTAND3
AAA_21
cobW
DUF5798
AAA_15
TsaE
AAA_14
NTPase_1
AAA_22
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
AGO53888
LinkDB
All DBs
Position
complement(973097..976351)
Genome browser
AA seq
1084 aa
AA seq
DB search
MKILSLRLKNLNSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LNVTPSQNELMTRHTAESLAEVEFEVKGVGYRAFWSQRRAKNAPDGNLQAPKVELALRED
GKILADKVRDKLDLTAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTEI
YGQLSERVFEQHKQAKADLDALHQRASGIELLNDEQRQQLESQLAELSAQETALSGQTRQ
QQQALNWLQQWQRTQHQQQEYQRQLSVVQQEQAAAEPQLQQLARSEPAEKLRPLHNDRHR
CRSEQQALQQQIAQMAQQQEYQLAQMAPLQQAVEKARAEQQAQAERQQIQQRLIDEQIVP
LDHQIAQLQKTQTELQQACDNSARQCHQQTTDLEQLNVQRSQLTAQAGQHQEKLNGLNAA
LMAQQQQQNALETQSPLAALRRRQTALAELRPARQQLFTLSSLFRQTSERLEQQRKEFTA
RQAQLGEHEQQLEETRRHYKQQKAHQLDVEKALELEKRIVSLEAERALLQSGEPCPLCGS
ASHPAIEQYQAVKPSETALRLTEMRVKTEALYTQGTELRTRCESLKEQQQRQQQQIEQDE
QQLASQRQQWQTLSAPLAFDFDLQDAERLSQWLNACDNEERQGQQGLAQHEQAAQAVQQA
KDALAELQAQQQQAQQQQALLDERFTLLEKNHADAQLQQQRLQQQWQEGEKTLSEHRAQR
LALFGEQHIPQVREQLRAQLATCEQASHQAAEQWQKAQEQRDRLAGQLAGLQQQQQRQSE
RLQQAEQTWLEALAASEFSDEAAFSAALLDDAQRRQLQQHKERLHKRQVEASALLAQAVH
TLEQQRQQRPEGLDETQADAPALSQSLEALAQQLKTLQLRQGEVRNQLESDAARRLNQQS
LFEQISQSQQQYDDWSYLNQLIGSKEGDKFRKFAQGLTLDHLVYLANNQLGRLHGRYLLQ
RKTSDALELQVVDTWQADALRDTRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEG
FGTLDAETLDTALDALDSLNASGKTIGVISHVEAMKERIPVQIKVKKVNGLGISRLEPQF
RLES
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctgagcctgcggctgaagaacctcaattcattgcagggcgagtggaagatc
gatttcaccgctgagccttttgccagcaatgggctgttcgccatcaccgggccaaccggc
gcgggcaaaaccaccctgctggatgccatctgcctggcgctgtaccaccagacaccgcgc
cttaacgtgacacctagccaaaacgaactgatgacgcgccacaccgccgagtcgttggcg
gaggtcgaatttgaggtcaaaggcgtcggctaccgcgccttctggagccaacgccgcgcc
aaaaatgcgccggacggcaatctgcaagcgccaaaggtggagctggcgctgcgtgaagac
ggtaaaatcctggcggataaagtccgcgacaagctggatctgaccgccgcgatcaccggg
ctggatttcggccgcttcaccaaatcgatgatgctgtcccaggggcagttcgccgccttc
ctcaatgccgatgccaatgaccgggccgaactgctggaagagctgaccggcaccgagatc
tacggccaactttccgaacgggttttcgagcagcacaaacaggccaaagccgatctggac
gccttgcatcaacgcgccagcggcattgagctgctgaatgacgaacagcgtcagcaattg
gagagccaattagctgagctgagcgcgcaggaaaccgccctcagcgggcagacccggcaa
cagcaacaggcgctgaactggctgcaacagtggcagcgaacgcagcaccagcagcaggaa
taccaacgccagttgagcgtcgtgcaacaggagcaggctgcggccgaaccgcagttgcag
cagttggcgcgcagcgaaccggcggagaaactgcgaccgctgcataacgaccgtcaccgc
tgccgcagtgagcagcaggcgctgcaacagcagatcgcccaaatggcgcagcagcaggaa
tatcagcttgcgcagatggcgccattgcagcaggcagtggaaaaagcgcgcgccgagcag
caggcgcaggccgagcgccagcagatccagcagcggctgatcgacgagcagatcgtcccg
ctcgaccaccagattgctcagttgcaaaaaacgcagacggaattgcagcaggcgtgcgac
aactccgcccggcagtgccatcagcagacaacggatctggagcagttaaacgttcaacgc
agccaattgaccgcacaggccgggcaacatcaggagaagcttaacggtcttaacgcggcg
ttgatggcgcagcaacagcagcaaaatgcgctggaaacgcagtcaccgctggcggcgctg
cgccggcgtcagaccgcgttggccgagctgcgcccggcacgccagcagctgttcaccctt
tcctcgctgttccgccagaccagcgagcggcttgaacaacaacgcaaagagtttaccgcc
cgtcaggcgcagcttggcgaacatgagcaacagctggaagaaacgcggcggcactacaag
cagcaaaaagcgcatcagttggacgtggaaaaagcccttgagctggaaaaacgcatcgtc
agtctggaggccgaacgcgcactgctgcaaagcggcgagccctgcccgttatgcggttcc
gccagccatccggccattgagcaatatcaggcggtaaaaccgtccgagacggcattgcgc
ctgacggaaatgcgcgtcaaaaccgaggcgctgtacacccagggcaccgaactgcgcacc
cgttgcgaaagcctgaaggagcagcaacagcgccaacaacagcaaatagagcaggacgag
cagcaactcgcctcccagcgccaacagtggcaaactctcagcgcgccgctggcgtttgat
ttcgatctgcaagatgccgagcgcctgagccagtggctgaacgcctgcgacaacgaagaa
cgccagggccagcaagggctggcgcagcacgagcaggcagcacaggcggtacagcaggcg
aaagatgcactggccgagctccaggcgcagcagcaacaagcgcaacagcaacaagcgctg
ctggacgagcgcttcaccctgctggaaaaaaaccacgccgacgcgcagttgcaacagcag
cgcttgcaacaacagtggcaagagggcgagaaaaccctgagcgaacaccgcgcgcagcgg
ctagcgctgtttggcgaacaacacattccgcaggtgcgcgaacagctgcgtgcccaactg
gccacctgcgagcaggccagccatcaggcggcggaacaatggcagaaagctcaggaacag
cgcgatcgcctggccggccagcttgccggcctgcaacaacagcagcaacggcagagcgag
aggctgcaacaggcggaacaaacctggctggaagcactggccgccagcgaattcagcgac
gaagccgcattcagcgccgcgctgttggatgacgcacagcgccggcaattgcagcagcat
aaagaacggttgcacaagcggcaggtggaggccagtgccctgctggcacaggcggttcat
acgctggaacaacagcggcaacagcgcccggaagggctggatgaaacccaggccgacgcg
ccagccctgagccagagcctggaggcgttggcgcagcaattgaaaaccttgcaactgcgt
cagggcgaagtgcgcaaccaattggaaagcgacgccgcacgccgcctcaatcagcaatcg
ctgtttgagcaaatcagccagagccagcagcagtacgacgactggagctacctcaatcag
ttgatcggttccaaagaaggcgataagttccgcaaatttgcccaggggctgacgctggat
cacctggtatacctggccaataatcagttggggcggctccacgggcgctacctgttgcaa
cgcaaaaccagcgacgcgctggaactgcaggtggtggatacctggcaggcggacgcgctg
cgtgacacccgcaccctgtccggcggcgaaagtttcttggtcagcctggcattggcgctg
gcgttgtctgacctggtcagccacaagaccagcatcgactcgctgtttctcgacgaaggc
ttcggcacgctggatgcggaaaccctggataccgcgctggacgccctcgacagcctgaat
gcctcaggtaaaaccatcggcgtgatcagccatgtcgaagcgatgaaagaacgcattccg
gtgcagattaaggtgaaaaaggtcaacggactgggtatcagccggctggagccgcagttt
cggctggaaagttag
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integrated database retrieval system
