Serratia plymuthica 4Rx13: SOD_c11220
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Entry
SOD_c11220 CDS
T02710
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase PhrB
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srl03400
]
SOD_c11220 (phrB)
Enzymes [BR:
srl01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
SOD_c11220 (phrB)
DNA repair and recombination proteins [BR:
srl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
SOD_c11220 (phrB)
Prokaryotic type
SOD_c11220 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AGO54112
LinkDB
All DBs
Position
1240502..1241932
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AA seq
476 aa
AA seq
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MATHLVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLL
QVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRR
LSGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGG
ALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTSSLS
PYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLMVAYPALCRHRP
FIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVKDLL
IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR
KWLPELADVPDNALHQPHLWAEKQQRTLDYPLPIVDHKQARLETLAAFEAAKRGEY
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggccactcatctggtctggctacgtaacgatctgcgtataaccgacaacaaagcgctg
cacgccgcctgttgcgatcccgccgcccgcgtgctggcggtgttcatcgctacccctgga
cagtggcggcagcatgagatggcgccgcgtcaggcggcatttattcacgccaacctgctg
caggttcagcaggcgctggcggatcgcggtatcccgctggtttgccatcagtgcgatgat
ttttccgccgctgttgactggctggtggcgtactgcgcgcaagagcgggtgaatgcgctg
ttttataaccgccagtacgagatcaatgagctaaagcgtgatcaacaagcgcaacggcgt
ttatccgggcaggtgatttgccaaagcttcgatgacagcctgctgttaccgccgggcagc
gtacaaaccggcggcggagagatgtacaaaatttatacgccattccgtaaggcttttatc
caacggctgaccgaatccgacgtccgttccttgccggcgcccaaacgtcgtgaaggcggc
gcgttgccggtgtcagttgcgccggcggcgttcgattatccgcaggttgaggcgggtgca
gattttcccgccggggaagacgcggcgctgaagcggctgcgcgctttctgccgcgagcaa
gtgcaggattacctgcaacaacgcgactttcccgctattgccggtaccagcagcctgtcg
ccgtatctggcgattggcgtactgtcgccgcgccaatgctttaaccgcctgcgcgccgaa
tgcccgcaggtgctggaaaacagcgacagcggcgcttttggctggctgaacgaattgatc
tggcgcgaattttatcggcatctgatggtggcctatcctgcgttatgcaggcaccgtccc
tttatcgagtggacggatagggtacgctggaggaataacgacgcactgttgctggcctgg
cagaaaggtgcgaccggctacccgatcgtcgatgccgccatgcgccagctgaataaaacc
ggctggatgcacaacaggttacgcatgatcagcgccagttttttggtgaaagatctgctg
atcgactggcgcgccggcgaacgctatttcatgtcgcagctgttggacggcgatctggcg
gcgaataacggcggctggcagtgggcggcttcaaccggcaccgacgccgcgccgtatttc
cgcatctttaacccgaccacccagggcgaacgttttgatccgcaaggcacttttatccgt
aaatggttgcccgagctggcggatgtaccggacaatgctcttcatcagccccatctctgg
gcggaaaaacagcaacgcacgctggattatcctttgccgattgtcgatcacaagcaggcc
cggctggagacgctggcggcctttgaagcggccaagcggggggaatattaa
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