Serratia plymuthica 4Rx13: SOD_c12000
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Entry
SOD_c12000 CDS
T02710
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOD_c12000 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srl03019
]
SOD_c12000 (rhlE)
Enzymes [BR:
srl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOD_c12000 (rhlE)
Messenger RNA biogenesis [BR:
srl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOD_c12000 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
UvrD-helicase
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGO54185
LinkDB
All DBs
Position
1320888..1322246
Genome browser
AA seq
452 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHPIKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPSIKAEPIINGRQGGGRGNGGGQRSGGGQRSGNGGGHSGQR
ENRSGGSARPQGDGKPRSGAPARRPRSRKPGE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaactctcggcttaagtgctgaaattctgcgcgctgttgaagaacagggc
tatcgcgaacctacgccaattcagcgccaggctatccctgtggtgttggaaggtcgtgac
ctgatggccagcgcacagaccggtaccggtaaaaccgctggctttaccctgccgctattg
cagctgctgagtaagcatgatcatccgatcaaaggccgtcgcccggtacgtgcgctgatc
ctgacgccaacccgtgaactggcggcgcagatcggcgaaaacgtcgaagcttacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggcggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgtcgacattctggtggcgacaccgggtcgcctgctggatctggaa
caccagaacgcggttgatctgtccaaaattgaaattctggtgctggacgaagctgaccgc
atgctggatatgggctttatccatgatatccgccgtgtgctggccaagctgcctgccaag
cgtcagaacctgctgttctcggccaccttctccgacgacatcaaagcgttggcgaacaag
ctgctgcacaacccggcatcggtggaagtggcgcgccgcaacaccgcgtccgagcagatc
gaacaaagcgtgcacttcgtcgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggaaacaagtcttggtgttcaaccgcaccaagcacggcgccaaccac
ctggccgagcagctgaacaaagacggcatcactgccgcagcgatccacggcaataaaagc
cagggcgcgcgtacccgtgcattggccgattttaaagacggcaaaattcgcgtgctggtg
gcaaccgacatcgcggcgcgcggtctggacatcgaccagttgccgcacgtggtgaactac
gagctgcctaacgtgccggaagattacgtgcaccgcatcggccgtaccggccgtgcagag
cgtaccggtgaggcgatctcgctggtctgcgtggatgaacacaaactgctgcgcgacatc
gagcgcctgctgaagcgtgaaatcccgcgtattgccctgccaggctacgagccggaccca
agcatcaaggcggagccgatcatcaacggccgtcagggtggcgggcgcggcaacggcggc
ggtcaacgctccggtggcggccagcgtagcggtaacggcggcggccatagcggccaacgt
gaaaaccgtagcggcggcagtgcccgccctcagggtgacggcaaaccgcgttcaggcgcg
ccggcacgccgtccgcgcagccgcaaaccgggcgaataa
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