Serratia plymuthica 4Rx13: SOD_c15430
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Entry
SOD_c15430 CDS
T02710
Symbol
ybjD
Name
(GenBank) YbjD
KO
K07459
putative ATP-dependent endonuclease of the OLD family
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99976 Replication and repair
SOD_c15430 (ybjD)
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Motif
Pfam:
DUF2813
OLD-like_TOPRIM
AAA_15
AAA_29
AAA_21
AAA_23
SMC_N
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AGO54528
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Position
1686899..1688563
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AA seq
554 aa
AA seq
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MFLERIEIVGFRGINRLSLMLDDNTLLLGENAWGKSSLLDALTLLLAPEQQLYRFEVHDF
HFPPGEEAAKDRHLQVVFTFCEKDLGHAHLPRYRHLSPLWVKGDDNLNRIYYRCEGELAD
DDTVCTWRSFLDAEGNAMQLHHIEQLAHAIIRIHPVLRLRDARFIRRLRPSTLNDEHPAD
NQALAQQLDQLTRELVRNPQKLTNGELRQGLAAMQQLLEHYFAEQGSQVARPRSHRLDQD
QDQQAWRSLDSINRMVAEPNSRSMRLILLGMFSTLLQAKGNVKLDPHARPLLLVEDPETR
LHPIMLSVAWGLLNQLPLQRITTTNSSELVSLVPVEHVCRLVRESGRVATYRLGPRGLGP
EDGRRIAFHIRFNRPSSLFARCWLLVEGETEVWLLSELARQCGYHFEAEGVRVIEFAQCG
LKPLLRFARRMGIEWHALVDGDEAGKKYANTVRSLLDNHGDSERDRLTALPAPDMEHFMF
REGFSPVYHRVASVPINAQMPIRKVILKAVHHSSKPDLAIEVAMQAGEWGTDSVPPLLKK
MFSRVIWLARGRAD
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgttcttagagcgaatcgagattgtaggtttccgcggcattaatcggctgtccctgatg
ctggacgacaacacgctgctgctcggcgaaaacgcctggggtaaatccagcctgctcgac
gcgctgaccctgctgctggcgccggagcaacagctataccgttttgaagtgcacgacttc
cattttcctcccggcgaagaggcggccaaagaccggcacttgcaggtggtgtttaccttt
tgcgagaaagacctcgggcacgctcatctcccccgttatcgccacctgtcgccgctgtgg
gtcaagggcgatgataatctgaaccgtatttattaccgttgcgaaggcgaactggccgat
gacgatacggtgtgcacctggcgcagttttttggacgccgagggcaatgcgatgcaactg
catcatatcgaacagctggcgcacgccattatccgtattcacccggtattgcgtttgcgc
gatgcgcgttttattcgccgcttgcggcccagcacgctcaatgacgagcaccctgcggat
aatcaggcgctggctcagcagttggatcaattgacgcgcgaactggtgcgtaatccgcaa
aagctgaccaatggcgagctgcgtcaggggctggcggcgatgcagcaactgctggaacac
tacttcgctgagcagggatcgcaggtggcgcgtccgcgcagccaccggttggatcaagat
caggaccagcaggcgtggcgctcgctggacagcatcaaccggatggtcgctgaaccgaac
agccgcagcatgcggctgattttgctgggcatgttttctacgctgctgcaggccaagggc
aacgtcaagttggatccgcacgcccgtccgttgctgttggtggaggacccggaaacccgg
ttgcacccgatcatgctgtcggtggcctgggggttgctcaaccagttgccgctgcagcgc
atcaccaccaccaattccagcgaactggtgtctctggttccggtggaacacgtttgccgg
ctggtgcgcgagtcggggcgggttgccacttatcggcttgggccacgcgggctggggccg
gaggatgggcggcggattgcttttcatattcgctttaaccgaccgtcatcgttgtttgcc
cgctgttggctgctagtggaaggcgagacggaggtttggctgctgagtgaactggcgcgc
cagtgcggctatcactttgaagcggaaggggtacgggtgattgaattcgcccagtgcggc
ctgaagccgttgctgaggtttgctcgccgcatgggcattgaatggcatgcgctggtggac
ggcgacgaggccgggaagaaatacgccaacaccgtgcgcagtttgctggataaccacggc
gacagcgagcgtgatcgcctgactgcgctgccggcgccggatatggaacactttatgttc
cgcgagggcttcagcccggtttatcaccgcgtagcttctgtgccgatcaatgctcagatg
ccgatacgcaaggtgatcctgaaggcggtgcatcactcttcgaaacccgatttggctatc
gaagtggcgatgcaggccggcgagtggggcaccgattccgtgccgccattgctgaagaaa
atgttctcgcgggtgatctggttggcgcgcggccgggcggattag
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