Serratia plymuthica 4Rx13: SOD_c18300
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Entry
SOD_c18300 CDS
T02710
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SOD_c18300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srl03400
]
SOD_c18300 (mfd)
Enzymes [BR:
srl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOD_c18300 (mfd)
DNA repair and recombination proteins [BR:
srl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SOD_c18300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
AGO54807
LinkDB
All DBs
Position
complement(1990847..1994326)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSTSDNRNRSASSSSRYSLPDRAGDLRQLGQLTGAACAVECAEIVERHNGPVMLIAPDMQ
NALRLRDEIQQFTDQMVTTLPDWETLPYDSFSPHQEIISARLSSLYHLPTMVRGVIILPV
NTLMQRVCPHEFLHGHALVMKKGQRLSREKLRAQLEQAGYRSVDQVMEHGEFATRGALLD
LYPMGSEEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKTAIELFRSQ
WREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGNLES
AAERFWLDVNQRYESRRVDPMRPLLAPDNLWLRVDALFGELKAWPRMALKTEVLPAKAGN
TNLDYRALPDLAVQAQNKAPLDQLRRFTESFDGSVIFSVESEGRRETLQDLLGRIKLGTS
LIQHLDQAEPAGRYMMVGASERGFLDGMRNRALICESDLLGERVSRRRQDNRRTINTDTL
IRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYSGEDKLYVPVSSLHLIS
RYAGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHNREQY
QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQIMDDAVDGKVDIIIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAEKLA
ELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSNQTEVELRMPA
LLPDDFIPDVNTRLSFYKRIASAKNDGELEELKVELIDRFGLLPDPARNLLQSAALRQHA
QKLGIKRIEGNERGGFIEFGEKNRVDPGYLIGLLQSNPQIYRLDGPTKLKFMLDLTDRQK
RLKFTEELLAAFREHTLAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctccgataaccgtaaccgttctgcatcgtcatcctcccgttattccctgccc
gatcgcgcaggcgatttgcgccagttggggcaactaaccggcgcggcctgcgccgtggag
tgcgccgagatcgtcgaacgtcataacgggccggtgatgctgatcgccccggatatgcag
aacgccctgcggctgcgcgacgaaatccagcagtttaccgatcaaatggtgaccacgctg
cccgactgggaaaccctgccctacgacagtttctcgccgcaccaggaaattatctcagcc
cgtctgtcgagcctgtaccacctgccgaccatggtgcgcggcgtcatcattctgccggta
aataccctgatgcagcgcgtctgtccgcacgaattcctgcatggccacgcgctggtgatg
aaaaagggccagcgcctgtcgcgcgaaaaactgcgcgcccagttggagcaagccggttac
cgcagcgtcgatcaggtgatggagcacggcgagttcgccacccgcggcgcgctgctcgat
ctgtacccgatgggcagcgaagaaccttaccgcatcgatttcttcgacgatgaaatcgac
agcctgcgcatctttgacgtcgacacccagcgcacgctgagcgaagtcgaggccatcaac
ctgctgccggcccatgaattcccgaccgacaaaaccgccatcgagctgttccgcagccag
tggcgcgagcagtttgaggtgcgccgcgacgccgaacatatttaccagcaggtgagcaaa
ggcacctggccggccggcatcgaatactggcaaccgctgttcttcagccagccgctgccg
tcgctgttcagctacctgccggccaacacgctgatcgtcaataccggcaacctggagagc
gccgccgagcgcttctggctggacgttaaccagcgttacgaaagccgccgcgtcgatccg
atgcgcccgctgctggcaccggacaacctgtggctgcgggttgacgcgctgtttggcgaa
ttgaaagcctggcctcgcatggcactcaaaaccgaagtgctgcctgccaaagccggcaac
accaacctggactatcgcgcgctgccggatctggcggtgcaagcccaaaataaagcaccg
ctggaccagttgcgccgctttacagaaagctttgacggcagcgtgattttctcggtcgaa
agcgagggccgccgcgaaacgctgcaagacctgctcggccgcatcaaactcggcacgtca
ttgattcaacatctcgatcaggcggaaccggccggccgctatatgatggtcggcgcctcg
gaacgcggtttcctcgacggcatgcgcaaccgggcgctgatctgcgaaagcgatctgctc
ggcgaacgcgtcagccgccgccgacaggacaatcgccgcaccatcaataccgataccctg
atccgcaacctggcggagctgcatcccggccagccggtggtgcatctggagcacggcgtc
gggcgttacgttggcctgacgacgctggaagccggcggcatcaaggccgaatacctgatc
ctgtcctactccggtgaagacaaactctatgtgccggtctcttcgctgcacctgatcagc
cgctatgccggtggcgcagatgaaaacgcgccgctgcacaagctgggcggtgacgcctgg
acgcgcgcgcggcagaaagccgcggaacgggtgcgggacgtagcggccgagctgctggat
atttacgcccagcgcgccgccaaatccggctttgccttcaaacacaaccgcgaacagtat
cagctgttctgtcaaagcttcccgtttgaaaccaccccagaccaggaacaggcaatcaac
gccgtgctgagcgacatgtgccagccgctggcgatggacaggctggtgtgcggcgacgtc
ggcttcggcaaaaccgaagtggcgatgcgcgcggccttcctggcggtggaaaacggcaag
caggtggcagttctggtgcccactacgctgttggcgcagcagcacttcgacaacttccgc
gatcgcttcgccacctggccgattcgcatcgagatgatgtcgcgtttccgcagcgccaaa
gagcagcaacagatcatggacgacgccgtcgacggcaaagtggacattattatcggcacc
cacaaactgttgcagagcgatctgcgctggaaagatctggggctgctgatcgtcgatgaa
gaacaccgtttcggcgtgcgccacaaagaacgcatcaaggcgatgcgcgccgatgtggat
atcctgacgctaaccgccacgccgatcccgcgtacgctgaatatggcgatgagcggcatg
cgcgacctgtcgattatcgcgaccccgccggcccgccgcctggcggtgaaaaccttcgtg
cgcgagtacgacagcctggtggttcgcgaggcgatcctgcgtgaagtgctgcgcggcggc
caggtttactatctgtacaacgacgtggagaacatcgagaaggccgcggagaaactggct
gagctggtgcctgaagcgcgtatcgccatcggccacggccagatgcgcgagcgcgatctg
gaacgggtgatgaacgatttccaccaccagcgttttaacgtgctggtctgtaccaccatt
atcgaaaccggcatcgatattcccagcgccaataccattatcatcgagcgcgccgatcgc
ttcgggctggcgcaactgcatcagttgcgtggccgcgtaggccgttcgcaccatcaggcc
tacgcctatctgctgacgccgaatccgaaggccatgagcaccgatgcgcacaaacggctg
gaagccatcgcttcgctcgaagatctcggcgcaggcttcgctttggcgacccatgacctg
gaaatccgcggcgcgggcgagctgctgggtgaagatcaaagcggccagatgaccaccgtc
ggcttctcgctgtacatggagctgctggaaagcgcggttgacgcattgaaaaacgggcgc
gaaccgtcgctggaagatctcaccagcaaccaaaccgaagtggagctgcgcatgccggcc
ctgctgccggacgattttatcccggacgtgaacacccgtctgtcgttctataaacgtatc
gccagcgcgaaaaacgacggcgaactggaagaactgaaggtggagctgattgaccgcttc
ggcctgctgcccgatccggcgcgcaacctgttgcaaagcgcggcgctgcgccaacatgcg
cagaaactggggattaagcgcatcgaagggaacgagcgcggtggttttatcgagtttggc
gagaagaatcgtgtcgatccgggttacctgattggcctgctgcagagcaatccgcaaatt
taccgcctggatgggccgaccaagctgaagttcatgctggacctgaccgatcgtcaaaag
cgcctgaagttcaccgaggagctcttggccgcattccgcgagcacacgttggcggcctga
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integrated database retrieval system
