Serratia plymuthica 4Rx13: SOD_c24490
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Entry
SOD_c24490 CDS
T02710
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srl03019
]
SOD_c24490 (hrpA)
Enzymes [BR:
srl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SOD_c24490 (hrpA)
Messenger RNA biogenesis [BR:
srl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SOD_c24490 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
NACHT
T2SSE
PhoH
ResIII
AAA_16
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AGO55423
LinkDB
All DBs
Position
complement(2747445..2751332)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLAASSAQLGELMLRDQQRLQRRLQGARKIKNPDAQQAAVAEVESDIAAALQKVQAR
AASCPKITYPENLPVSQKKQDILNAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNHA
PIIEVSGRTYPVEVRYRPVVDDAEDTDRDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALNRLDLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNILDGVRLLEELGAIKTAENGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAYVNLWDYLKEQQKEHSSGQFRRLCRNDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPSDYRSVHTALLTGLLSHIGQKDADKQEFTGARNARFSIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMASEKVTLF
GLPIVAARPVNYSTIDPLLCRELFIRHALVEGDWQTRHAFFSANLKLRAEVEELEHKSRR
RDILVDDETLFSFYDQRIPSDVVSGRHFDNWWKTAGKQKPDLLSFEKEMLIKDGANKVSA
LDYPNAWHQGNLKLRLTYQFEPGTDADGVTVHIPLPILNQIEDRGFEWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGVTVSRDDWHWDQV
PDHLKMTFRVVGENHKTLLEGKDLTALKLQLKDKVQETLSAVADDGLEQSNLHIWSFGKL
PEFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSEQEQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCISCGIDKLIAEHGGPVWQEDNFARLQELVRGEL
NETVVGVAKQVEQILTTVFNINKRLKGRVDMSLALALSDIKTQLGGLIYRGFVTNNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMLRVDQVQQAWQQWLNKLPPKRRQDDEVKEVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgcggcatcctctgcccaactgggcgaactgatgctccgtgatcaa
caacgcctgcaacgtcggttgcagggcgcacgaaaaatcaaaaatcccgatgctcagcag
gcggccgtcgctgaagtagaaagtgacattgcggcggcattgcagaaagtgcaggcgcgc
gccgcctcttgcccgaaaatcacctatccggaaaacctgccggtcagccagaaaaagcag
gatatcctgaacgcgatccgtgaccatcaggtagtgattgtcgccggggaaaccggttcg
gggaaaaccacccagttgccgaagatctgcctggaactggggcgtggggtgaaggggctg
atcggccatacccagccacggcgcctggcggcgcgcaccgtagcaaaccgcattgccgat
gagctggaaacgccgctcggcggtagcgtcggttataaggtgcgctttaacgatcaggtc
ggggaaaatacgctggtcaagctgatgaccgacggtattttgctggcggaaatccagcag
gacaggctgctgatgcagtacgacacgttgattatcgatgaagcgcacgaacgcagcctg
aacatcgactttatcctcggttatctgcgcgaactgttgccgaagcgcccggatctgaaa
gtcatcattacctcggcaaccatcgatccgcagcgtttttcgcgccatttcaatcacgcg
ccgattatcgaagtttctggccgcacttatccggtcgaggtgcgttatcgcccggtggtg
gacgacgccgaggataccgatcgcgatcaactgcaggcgattttcgacgcggtggatgaa
cttggtcgcgaagggcccggggatatcctgatctttatgagcggcgagcgtgaaattcgc
gataccgccgatgcattgaaccgtcttgatttaccgcataccgaagtattgccgctgtat
gcgcggttatcgaacagcgaacaaaaccgggtgttccagtcgcatcatggccgccgcatt
gtgttggcgaccaacgtggcggaaacctcgctgacggtgccgggcatcaagtatgtcatc
gatccgggcaccgcacgcatcagccgctacagtttccgcaccaaggtccaacgcctgccg
atcgagccggtgtcgcaggcttccgccaaccagcgtaagggccgctgtggccgcgtgtcg
gacggtatctgtatccgcctgtactccgaacaggatttcctgtcgcggccggagtttacc
gatccggaaatcctgcgcaccaacctggcgtcggttatcttgcagatgacgtcgctcggg
ctgggggatatcgccgcattcccgtttgtcgaagcgccggacaagcgcaatattctggac
ggcgtgcgccttttggaggagttgggagcgattaaaacggctgaaaacggccattatcag
ctcaccccgcagggccgccaactggcgcagttgcctatcgatccgcgcctggcgcgcatg
gtgctggaagcgcaaaagagcggcagcgtgcgtgaggtgatgatcatcactgccgcgctg
tcgatccaggatccgcgagagcggccgatggacaagcagcaggcgtcggacgagaaacac
cgtcgcttcgccgataaagactcggacttcctggcctacgttaacctgtgggactacctg
aaagagcagcaaaaagagcactcctccggccagttccgccggctgtgccgcaatgatttc
cttaactacctgcgggtgcgtgaatggcaggatatctacacccaactgcgccaggtggtg
aaagagctggggctgccggttaacagcgaaccttccgattaccgcagcgtgcataccgcg
ttgctcaccgggttgctgtcgcacattggccagaaggatgccgacaagcaagagttcacc
ggagcccgcaacgcccgtttctcgatcttcccaggctccggcctgttcaagaagccgccg
aaatggacgatggtagcagaactggtggaaaccagccgcctgtggggccgcatcgccgcg
cgcatcgagcctgagtggattgaaccgctggcccagcatctggtgaagcacagttacagc
gaacctcactggtccaaatcccagggcgcggtgatggccagcgaaaaagtgacgctgttt
gggctgccgattgtcgccgcgcggccggtcaattacagcactattgatccgctgctgtgc
cgtgagctgtttatccgtcatgcactggtggaaggcgactggcagacgcggcatgcattc
ttcagcgccaacctgaagctgcgtgccgaggtggaagagctggaacataaatcgcgccgc
cgtgacattctggtggatgacgagactttgttcagtttctacgaccagcgcattccgagc
gatgtggtgtccgggcgtcattttgacaactggtggaaaaccgccggtaaacaaaagccg
gacctgctcagttttgaaaaagagatgctgatcaaggacggcgccaacaaggtcagcgcg
ctggactacccgaacgcctggcaccagggcaatctcaaactgcgcctgacttaccagttt
gaacctggcaccgatgccgatggcgtcacggtccatattcctctgcctattctcaatcag
attgaagatcggggtttcgaatggcagatcccggggattcgccgtgagttggtgattgcg
ctgatcaagtcgctaccgaagccggttcgccgaaactttgtgccggcgccgaactacgcc
gaggcgttcctcgggcgggtgaccgcgctggagttgccgctgctggatgcgctggagcgt
gaattgcggcgcatgactggcgtgacggtgtcacgagacgactggcactgggatcaggtg
cccgatcatcttaaaatgacgttccgtgtggtgggtgaaaatcacaaaaccttgctcgaa
ggcaaagatctgacggcgctgaagctgcaattgaaggacaaagtgcaggagacgctgtcg
gcggtggcggatgatgggctggaacaaagcaatttgcatatctggagcttcggcaaactg
cccgagttttatgagcagaaacgcggcggctactcgatgaaagcctacccggcgctggtg
gatgaaaaagacagcgtggcgatccgcctgttcgacagcgagcaagagcagcaacaggcg
atgtggcagggtacgcgccgcctgttgttgctgaatatcccatcgccaatcaagtatctg
catgaaaaactgcccaacaaagccaagctggggctgtattttaacccttatggcaaggtg
ttggatctgatcgacgattgcatctcgtgcggtatcgacaagctgatcgccgaacatggc
gggccggtatggcaggaagataacttcgcacgcttgcaagagttggtgcgcggcgagctg
aatgaaaccgtggtgggggtagccaagcaggtcgagcagatcctgaccacggtattcaac
atcaacaagcggctgaagggccgggtggacatgtcgttggcgctggcgctctcggatatc
aaaacccagcttggtggcctgatttatcgcgggttcgtcaccaacaacggctggaagcgc
ctgccggatacgctgcgttatttgcaggcgattgaacgccggctggagaagctggcgatc
gatccgcaccgcgatcgcgcgcagatgctgcgggtggatcaggtgcagcaggcgtggcaa
cagtggctgaacaagctgccgccgaaacgtcggcaggatgacgaggtgaaagaagtgcgc
tggatgatcgaagagctgcgcgtcagcctgttcgcccagcaactcggcacgccttatccg
atttcggacaaacgtatcttgcagactatcgagcagctttcggcctga
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