Serratia plymuthica 4Rx13: SOD_c24910
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Entry
SOD_c24910 CDS
T02710
Symbol
dacD
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase DacD
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl00550
Peptidoglycan biosynthesis
srl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SOD_c24910 (dacD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
srl01002
]
SOD_c24910 (dacD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
srl01011
]
SOD_c24910 (dacD)
Enzymes [BR:
srl01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SOD_c24910 (dacD)
Peptidases and inhibitors [BR:
srl01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
SOD_c24910 (dacD)
Peptidoglycan biosynthesis and degradation proteins [BR:
srl01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
SOD_c24910 (dacD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
AGO55465
LinkDB
All DBs
Position
complement(2795898..2797067)
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AA seq
389 aa
AA seq
DB search
MKRSVLSVMTGVLLPLAVQAADAPLSFPLNTPPAIDAASYVLMDYTTGQVLAENNADERR
NPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDRVTVR
DLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSTQLGLQNTHFETVHGLDAPGQFT
TAGDLAVISRAIIMSEPAEYHMYSEKSLSWNGITQQNRNGLLWDKNLRVDGLKTGHTASA
GFNIIASATEGDRRLIAVVMGGKSAKGREDQARKLLTWGLRDFATVHLFSAGQTLGQEKV
WYGDRHLVPVGSEQDQYLSLPKREADKLKAQYVIKPSRLEAPLAQGQPIGEIRISDNGKL
LKTLPLVALQPVNNGGMFSRLMDYAKLKL
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgttcagtattgtctgtgatgaccggagttctgctgccgttggcggtacaggcg
gcggatgcgccactcagtttccctctcaatactccgccggcgatagacgcggcttcttac
gtattgatggattacaccaccggtcaggtactggcggagaacaatgcggacgagcgacgc
aatccggccagcctgaccaaactgatgaccggattggtgattgatcatgcgctcgaccag
cacaaaattggcctggacgacgtggtgaccgtgggcaaagacgcctgggcgcagggcaat
ccggtgttcaagggctcctcgctgatgttcctgaagcccggtgacagggtcacggtgcgc
gatctcagtcgcggcattattattgactccggcaacgatgcctgcgtggcgatggcggac
tacgtggcgggcagccaggccgcattcgtcaaattgatgaatgaaaaaagcactcagctt
ggcctgcaaaatacgcattttgaaaccgtccacgggctggacgcaccgggccagttcact
acggccggcgatctggcggtgatttcacgcgccatcatcatgagcgaaccggcggaatat
catatgtacagcgaaaaatcgctgtcctggaacgggatcactcaacagaaccgcaacggg
ctgctgtgggataaaaacctgcgggtggacggcctgaaaacgggtcataccgcatcggcc
ggctttaacattattgcctccgcaaccgaaggcgaccggcgtttgattgccgtcgtgatg
ggcggtaaaagcgcaaaagggcgagaagatcaggcccgcaaactgctgacctggggtctg
cgagatttcgccaccgtgcatctgtttagcgccgggcaaacgctggggcaggaaaaagtg
tggtatggcgatcgccaccttgtgccggtgggcagtgaacaggatcaatacctcagcctg
ccaaagcgcgaggcggacaagttgaaagcccagtatgtgataaaaccttcgcgtcttgag
gccccgttggcacaggggcagccgattggggagatccgcatcagcgataacggcaagctg
ttgaaaactttgccgttggtggcgctgcagccagtaaacaacggcggtatgttctcgcgc
ctgatggactatgcgaaactgaaactctga
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