Serratia plymuthica 4Rx13: SOD_c24930
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Entry
SOD_c24930 CDS
T02710
Symbol
rnb
Name
(GenBank) exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srl03016
]
SOD_c24930 (rnb)
Enzymes [BR:
srl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SOD_c24930 (rnb)
Transfer RNA biogenesis [BR:
srl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SOD_c24930 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AGO55467
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Position
2799860..2801794
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIQCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTHFITEGEDHLAPWWVTLARHNLEKEAPEMVAI
SEPDAALPREDLTALNFVTIDSASTEDMDDALFVQDNGDGSLQLTIAIADPTAYVEQGSP
LDDIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLACRVTIGTDGALADDIRF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSDEIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGEVLDIITEQRRSANRIVEECMIASNVCAAIVLRDRLGFGIYNVHTGFD
PALVEQAVTVLQANGVEADAEKLLTLDGFCELRRHLDSQPTQFLDSRIRRSQTYAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIAEQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLQDKAGTDERFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHSVRDE
MVCSQDTGTVQVKGEVVYRQSDTLQVNIAEVRMETRSVIAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtaaaagggactgagaaaggctttggctttcttgaggtcgacggt
caaaagagctatttcatcccaccgccgtacatgaagaaagtcatgcatggggatcgcgtg
atcgccaccctgcacaccgagaaagaacgcgaaattgccgagccggagaccctggtcgag
ccattcttgtcgcgctttgtcggtcgcgtgcagaagcgtgatgaccgcctgtccatcgtg
cccgatcatccgttgctgaaagacgcgattcagtgtcgcccggtgcgtgaactgacccat
aacttccaggccggtgactgggcggtagcggaaatgcgccgccacccgttgaaaggcgat
cgcggcttcaacgccgatctgacccacttcatcaccgaaggcgaagatcatctggcccct
tggtgggtcacgctggctcgccataatctggaaaaagaagcaccggagatggtggccatc
agcgagccggacgccgcgctgccgcgtgaagatctgaccgcgctgaattttgtcaccatt
gacagcgccagcaccgaggatatggacgacgcgttgttcgttcaggacaacggcgacggc
tcgctgcaactgaccatcgccattgccgatcctaccgcttacgtagagcaaggcagcccg
ttggatgatatcgcccgcaagcgcgccttcactaactacctgccgggcttcaacattccg
atgttgccgcgcgatctgtcagataacctgtgctcgctgcgcccgaacgaacgccgtccg
gtactggcttgccgcgtcaccataggtaccgatggcgcgttggctgacgacattcgtttc
ttcgccgccgagatcgagtcgaaagccaaactggtttatgacgaagtctccgactggctg
gaaggcattgccggctggcagccgccaagcgacgagattgcacagcaaatcaccctgttg
aaacgcgtctgcgatgcccgtaacgcctggcgccatcagcatgcgctggtgttcaaggat
cgccctgattaccgctttgttctgggcgaaaaaggcgaagtgctggatatcatcaccgaa
caacgccgcagcgccaaccgtatcgttgaagagtgcatgattgcctctaacgtgtgcgcc
gccatcgttctgcgcgatcgcctgggcttcgggatttacaacgtgcataccggtttcgat
ccggcgctggttgaacaggcggtgaccgtgctgcaagccaacggtgtggaagccgatgcc
gagaaactgctgacgctggacgggttctgcgaactgcgccgtcatctggactcgcaacct
acccagttcctcgacagccgtatccgccgttcccagacttatgccgagatcagcaccacg
ccgggcccgcatttcggcctggggctggaagcctatgccacctggacctcaccgatccgt
aaatacggcgatatggtcaatcaccgtctgctgaaagccatcatcgccgaacagcctgcc
gaaaaaccgcaggacgacgtgacggtccaattggcggaacgccgtcgtcttaaccgcatg
gcggagcgtgacgtcggtgactggctgtatgcgcgttacctgcaagacaaagccggcacc
gatgaacgcttcaatgcggaaatcatcgacgtgacccgaggcggtctgcgcgtgcgcctg
ctggacaatggtgcggtcgcctttatccctgcaccgtttattcactcggtgcgtgatgaa
atggtctgcagccaggataccggcacggtgcaagtgaaaggcgaagtcgtctatcgccaa
agcgatactctgcaggtcaacatcgccgaagtgcgtatggaaacccgcagcgtgatcgcc
aaaccggcggcataa
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