Serratia plymuthica 4Rx13: SOD_c25080
Help
Entry
SOD_c25080 CDS
T02710
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srl03032
]
SOD_c25080 (topA)
03400 DNA repair and recombination proteins [BR:
srl03400
]
SOD_c25080 (topA)
Enzymes [BR:
srl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SOD_c25080 (topA)
DNA replication proteins [BR:
srl03032
]
Prokaryotic type
DNA Topoisomerases
SOD_c25080 (topA)
DNA repair and recombination proteins [BR:
srl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SOD_c25080 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AGO55482
LinkDB
All DBs
Position
complement(2818649..2821246)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSTEDKAKKKVK
KDEKTALVNRMGVDPYHGWKADYEILPGKEKVVAELKSLAENADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIQQAFKQPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKNDTALQMEVTH
AHDKPFKPVNREQTHAALKLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGDNFGDKYLPKAPNQYSSKEN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLSVKAGDY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPYVEVGSDLELQKLIPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDGLDQVANNHAEWKAVLDEFFAEFSEQLETAEKDPEDGGMRPNQMVMTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPETEVLNILEGDDAETNALRARH
RCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGSEMHL
KMGRFGKYMGCTNETCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVADGEGNKTMVRFSRKTKQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatac
ttaggtaatgactacgtggtgaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcaaccgaagacaaagccaagaagaaagttaaa
aaagatgagaaaacggcgctggtaaatcgaatgggcgtcgatccttaccatggctggaaa
gcggattatgaaattctgccaggtaaagaaaaagttgtcgcagagttaaaatcgttggcg
gaaaacgccgaccacatttatctcgcaacggaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtgatcggcggtgacgacaaacgctttagccgcgtggtgttcaac
gaaatcaccaagaacgcgatccaacaggcttttaaacagccgggcgagttgaatatcgat
cgtgttaacgcacagcaggcgcgtcgctttatggaccgcgtggtgggttacatggtatcg
ccgctgctgtggaaaaaaattgcccgcggcctgtccgctgggcgcgtgcaatccgttgcg
gtacggttggtggtggagcgcgaacgcgacatcaaagccttcgtgccggaagagtactgg
gaactgcacgccgatctgctggcgaagaatgataccgcgctgcagatggaagtgacacat
gcccacgacaagccattcaaaccggttaatcgtgagcagacccacgccgctctcaaactg
ctggagaaagcccgttatacggtgctggatcgcgaagacaaacctaccagcagcaagccg
ggtgcgcctttcattacttctacgctgcaacaggcggccagcacccgtctgagttttggc
gtgaagaaaaccatgatgatggctcagcggctgtatgaagccggccacatcacctacatg
cgtactgactccaccaatctgagccaggatgcgctcaatatggtgcgtggctatatcggc
gacaatttcggcgacaagtacttgccgaaagcgccaaaccagtacagcagcaaagaaaac
tcgcaggaagcgcacgaagctatccgtccgtcggacgtgaacgtgctggccgagcagttg
aaagatatggaagcagatgcgcaaaagctgtatcaactgatctggcgccagtttgtggcc
tgtcagatgacgcctgcgcagtacgattccactacgctgtcagtgaaggccggcgattat
caactgcgcgccaaaggccgtacgttgcgtttcgatggctggaccaaagtgatgcctgct
ctgcgcaagggtgatgaagaccgcaccttgccgtatgttgaagtaggcagcgatctggaa
ctgcaaaagctgatcccgagccagcacttcaccaagccgcctgcgcgttacagcgaagcc
tcgctggtgaaagagctggaaaaacgcggcatcggccgcccatcgacctatgcgtcgatc
atctcgaccattcaggaccgtggctatgtgcgggtcgaaagccgccgtttctacgccgag
aaaatgggtgagatcgttactgaccgtctggaagaaaacttccgtgagctgatgaactat
gactttacagcgcgcatggaagacggccttgaccaggtagccaataaccacgccgagtgg
aaagcggtgctggatgagttttttgccgagttcagcgaacagttggaaacggcggagaaa
gatcctgaagacggcggtatgcgcccgaatcagatggtcatgaccagcatcgattgcccg
acctgcggccgtaaaatgggcatccgtaccgccagtaccggcgtgttcctcggttgttcc
ggttatgcgctgccgccgaaggagcgctgcaaaaccaccattaacctggtgccggaaacg
gaagtgctgaatatcctcgaaggggatgatgcagaaaccaacgcgttgcgtgctcgccat
cgttgccaaaaatgcggcacggcgatggacagctacctgatcgataaccagcgtaagctg
cacgtttgcggtaataaccctgcgtgtgacggctatgaaatcgaagagggcgaattccgc
ctgaaagggtatgacggcccggtagttgagtgcgacaaatgtggttccgaaatgcacctg
aaaatggggcgcttcggtaagtacatgggctgcaccaacgagacgtgcaaaaacacccgt
aaaatcctgcgtaacggcgatgttgcgccgccgaaggaagatccggttccattgccggaa
ttgccgtgcgaaaaatcagacgcttactttgttctgcgcgacggtgcagccggcgtgttc
ctggcggccaacaccttccctaaatcgcgcgagactcgtgcgccgctggtagaagagctg
gcccgtttcaaggatcgtctgccggaaaaactgcgttacctggcggatgcgccggtagcg
gatggcgaaggcaacaaaacgatggtgcgtttcagccgtaaaaccaaacagcagtatgtc
tcttcagagaaagacggcaaggccacgggttggtccgctttctacgttgacggcaaatgg
gttgaaggcaaaaagtaa
DBGET
integrated database retrieval system
