Serratia plymuthica 4Rx13: SOD_c26000
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Entry
SOD_c26000 CDS
T02710
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srl03016
]
SOD_c26000 (rnd)
Enzymes [BR:
srl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SOD_c26000 (rnd)
Transfer RNA biogenesis [BR:
srl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SOD_c26000 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AGO55573
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All DBs
Position
complement(2918157..2919329)
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AA seq
390 aa
AA seq
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MPALLCLNHESDQENDVLNYQLITTDAGLQQVCEQARNHAQIALDTEFVRTRTYYPQLGL
IQLYDGEQLSLIDPLPIKQWQPFIDLLSDTQIVKFLHAGSEDLEVFLNAFKTLPTPMVDT
QILAAFTGRPLSCGFATLVTEYMQVDLDKSESRTDWLARPLTEKQCVYAAADVFYLLPMA
QQLVQETEDAGWTAAAANECLLLCQRRSESLAPELAYREITNAWQLRPRQLGCLQKLAEW
RLRQARERDLAVNFVVREENLWQVARYMPTSLGELDSLGLSGPEIRYHGKTLLALVAEAG
ELDEAALPEPLSNLIDQPGYKKVFKDIKAAIVIVSEQSGLSSELLASRRQINQLLNWHWK
LKSGDSLPELVSGWRGDLLATPLQDILKNY
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgttgttgtgtttgaatcatgaaagcgaccaagagaatgacgttttgaactat
cagttgatcactaccgatgccggattgcagcaggtctgcgagcaggcaagaaaccatgcc
cagattgcgttggacaccgaatttgtcagaacgcgcacctactatccgcagttaggcctg
attcagttatacgacggtgaacaactctccctgatcgatcccttgccgatcaagcaatgg
cagccgtttatcgatctgctgagcgatacccagattgtgaaattcctgcacgccggcagc
gaagaccttgaagtattcctgaatgcgttcaaaacgctgccgaccccgatggtcgacact
cagatcctggcagcctttaccggtcgaccgctgtcttgtggttttgcgactctggtgacg
gagtatatgcaggtagatctggataaaagtgaatcccgtacggattggctggcgcgtccg
ctgacggaaaaacagtgcgtatacgccgcagccgacgtgttctacctgctgccgatggcc
cagcaactggtgcaggaaaccgaagacgccggttggactgccgccgccgccaatgagtgc
ctgctgctctgtcagcgccgcagcgagtcgctggcgccggaattggcctaccgtgaaatc
accaacgcctggcaactgcgcccgcgccaactgggctgtttgcagaaactggcggaatgg
cgactgcgtcaggcacgcgaacgtgatttggcggtaaactttgtggtacgcgaggaaaat
ctctggcaggtggcgcgctatatgccaacttcgttgggagagttggattcgctcggcctg
agcggcccggaaattcgttatcacggcaagacgttgttggcgttggtggccgaggccggc
gagctggatgaagctgcactgcccgagccgttgtccaacctgatcgaccagccaggctat
aagaaagtgttcaaggatatcaaagcggcgatcgttatcgtcagtgaacaaagcgggttg
agcagtgaattgctggcatcgcggcggcagattaaccaactgctgaattggcattggaaa
ttgaaaagcggtgatagcctgccggaattagtcagcggttggcgcggtgatttattagcg
acgccacttcaggacattctgaaaaattattaa
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