Serratia plymuthica 4Rx13: SOD_c26930
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Entry
SOD_c26930 CDS
T02710
Symbol
appA
Name
(GenBank) oligopeptide-binding protein AppA
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SOD_c26930 (appA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
srl02000
]
SOD_c26930 (appA)
Transporters [BR:
srl02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
SOD_c26930 (appA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
T2SS-T3SS_pil_N
Motif
Other DBs
NCBI-ProteinID:
AGO55666
LinkDB
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Position
complement(3011482..3013170)
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AA seq
562 aa
AA seq
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MSRIKNKINKLLQKRLAPLAIACAVGLAFSVQAELLTEGITPASDASQVPAAAKLRKDTV
VAGILEPQGNFNPYLFTNGWDENVTDVIFTRLIGLDSQGKPVARLAESWQISPDNRVYTL
KLRPNLVYSDGSPIKAEDIAFTLTLLHDPAYDGDTDIAPAHIQGGAEYKNGTAPSISGLK
VVDDRTIQITTTQPGATTLQLIGGPVLSKAYYGKDYQRGKLESVRALNGKPLGNGPYIYD
KYVPGQEIRFHANPNFYLGSPPVARFIYRVTNPATNFQLFQTGETDYDAFTAKPDDIEQL
KLLGFANINLYSSSDYSRIDFNFKRPALQDARVRQALIYGLDRQKLITVVYQGYGTVANQ
PISPVSWAYDPQGINPYAYDVNKAKQLLDQAGWKPGADGIRQKDGKKLELTLLVTKKLLN
DALVPIAKDNYRQIGVLLKPQVLDFNALLAQRKAGNYDLASLSTSSLNDPHDGVRDYISQ
VSETGYNNPQVDKLIGQANATLDIEQRKPLYHQLYQVLAEDPPVILLGNRKILSASSARV
TGFKPDVYNGLTGSLPDVKLVQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagaataaaaaacaagataaacaaactgttgcaaaaacggctggcgccattggcg
atagcctgtgccgtgggactggccttcagcgttcaggcggaactcctgacggaaggcatt
accccggccagcgacgccagccaggtgccggcggccgccaagttgcgtaaagacaccgtg
gtggccggtattctcgagccgcagggcaattttaacccttatctgtttaccaacggctgg
gacgagaacgttaccgacgtgattttcacccgcttgattggcctggacagccagggcaaa
ccggtggcgcggctggcagaatcctggcagatcagcccggacaaccgggtgtataccctc
aagctgcgtcccaacctggtctacagcgacggatcgccgataaaagcggaagatatcgcc
tttacccttacgttgctgcatgacccggcttatgacggcgacaccgacattgctccggcg
catatccagggcggggcggagtataaaaacggcactgcgcccagcatcagcgggctgaag
gtcgtcgacgatcgcactattcaaatcaccaccacccagcctggggcgacgaccttgcaa
ctgatcggcgggccggtgctgtcgaaagcctattacggcaaggattaccagcgtggcaag
ctggagagcgtgcgtgcgctgaacggcaagccgttgggcaacgggccttatatttacgat
aaatacgtgccggggcaggagatccgtttccacgccaacccgaatttctacctcggctcg
ccgccggtggcgcgctttatttaccgcgtgaccaacccggccaccaacttccaactgttc
cagaccggcgaaaccgattacgacgccttcaccgccaagccggatgacattgagcagttg
aagctgctcggctttgccaacatcaatctgtacagctccagcgactacagccgtatcgat
ttcaactttaagcggccggcgttgcaggatgcgcgcgtgcggcaggccttaatctacggg
ctggaccgccaaaagctgattaccgtggtgtatcaggggtacggcaccgtggctaatcag
ccgatctctcccgtttcctgggcttacgatccacagggtattaatccgtacgcctacgac
gtcaacaaagcgaagcaactgctggatcaggccggctggaaaccgggcgcggacggcatt
cgccaaaaagacggcaaaaagctggagctgacgctgctggtgaccaaaaagctgctgaat
gacgcactggtgccgatcgccaaagacaactaccggcagattggcgtgctgctgaagccg
caggtgctggatttcaacgccttactggcgcaacgcaaggcgggcaattatgacctggca
tcgctcagtaccagcagcctgaacgatccgcatgatggggtgcgcgattacatcagccag
gtgagtgaaaccggctacaacaacccgcaggtggacaagctgatcggccaggccaacgct
acgctggatatcgagcagcgcaaaccgttgtatcaccagttgtatcaggtcttggccgaa
gatccgccggtaatcctgctgggcaaccgcaaaatcctcagcgccagcagcgcccgtgta
accggctttaaaccggacgtctacaacggcctgaccggcagcctgccggacgtaaaactg
gttcagtaa
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