Serratia plymuthica 4Rx13: SOD_c27510
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Entry
SOD_c27510 CDS
T02710
Symbol
yncD
Name
(GenBank) putative TonB-dependent receptor YncD
KO
K02014
iron complex outermembrane recepter protein
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
srl02000
]
SOD_c27510 (yncD)
Transporters [BR:
srl02000
]
Other transporters
Pores ion channels [TC:
1
]
SOD_c27510 (yncD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
Motif
Other DBs
NCBI-ProteinID:
AGO55724
LinkDB
All DBs
Position
complement(3085551..3087698)
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AA seq
715 aa
AA seq
DB search
MNNTRKNTLASAIVIPALLPLSLCYAQDSEGEQTMVVTAKRSGLSELSTPAAVSVVNGDQ
IRDAKPQINLSESLGSVPGLQIQNRQNYAQDLQLSVRGFGARSMYGVRGVRIYVDGIPAT
MPDGQGQTSNIDLNSVDKVEVLRGPFSALYGNSSGGMVNVETETGQQPNRIEAGSYFGSY
GTWRNGVKASGATGDGSHAGDVNYTISGTRFTTQGFRDHSGAQKNLGNAKLGVRIDDVST
LTLLFNSVDINANDPGGLTSAEWHDNPRQAPRADQYNTRKTTSQTQAGLHYERQMGVNDD
LSVMMYAGERETTQYQSIPVAVQQRSAQHPGGVIDLTRHYQGIDTRWTHRGELVAVPYTL
TGGLDYETMTEQRKGYENFTQSNGVTELGTQGALRRNERNLMWNVDPYLQTSWKLTPQLT
LDAGARYSTVNFDSNDHYVTGSNGDDSGSASYHQWLPAGSLNYAVSRGWNLYLSAGRGFE
TPTINELSYRPGDQSGLNFGLKPATSDTVEFGSKTRIGNGLLTAAVFQTDTKNEIVVDES
SNGRTSYKNAGQTRRRGLELALDQQFAYDWRLQLAWTLLDARYRDDVCGDSQCTEANKVP
SGNRMPGIARNMGFASFAWAPPEGWYAGAEVRYMSDIQVNDENTEQAPSYTTVGLNTGYR
YPVGNWMLNVFGRVDNLFDRQYVGSVIVNEGNGRYYEPAPGRNWGGGVSVSYSFE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaataacacccgtaaaaatacgctggcgtccgccatcgtcattcccgccttactgccc
ctttcattgtgctatgcgcaagacagcgagggtgaacagaccatggtggtgaccgccaaa
cgcagcggcctttccgaactctcgacgcccgccgccgtcagcgtggtgaatggcgatcaa
atccgtgacgccaagcctcagatcaacctgtctgaaagcctgggcagcgtgcctggcctg
caaattcaaaaccgccagaactatgcgcaagatttgcagttatcggtgcggggttttggc
gcacgttctatgtatggcgtgcgcggcgtgcggatctatgtggacggcattccggccacc
atgccggatgggcaggggcaaacctcgaatatcgacctgaactcggtcgacaaggtggaa
gtgctgcgtgggccgttttccgcgctttacggcaactcctccggtggcatggtgaatgtg
gaaaccgaaaccggccaacagcccaaccgcattgaggcgggcagttattttggcagctac
ggcacctggcgcaatggcgtcaaagcctccggggcaaccggggatggcagccatgccggc
gacgttaactacaccatttccggcacgcggtttaccactcaaggattccgcgaccacagc
ggtgcgcaaaagaacctcggcaacgccaagctgggcgtgcgtatcgacgatgtcagcacg
cttacgctgctgttcaacagcgtggatatcaacgccaacgatcccggcggcctgacgtct
gccgaatggcacgacaacccacggcaggcaccgcgagccgatcaatacaatacgcgcaaa
accacctcgcagacccaggccggattgcactatgaacgccagatgggcgtcaatgatgac
ctgagcgtgatgatgtacgccggcgaacgcgaaaccactcagtaccaatcgatcccggtc
gcggtacagcagcgcagcgcacagcacccgggcggggtgattgacctgacgcgtcattat
caggggattgatacgcgctggacccaccgtggcgaactggtggcggtgccttacactctg
accggcggtctggactatgaaaccatgaccgaacagcgtaaagggtatgaaaactttacc
cagtccaacggcgtgaccgaattgggcacccagggcgcgctgcgccgcaacgaacgcaac
ctgatgtggaatgtggacccttatctgcaaacttcatggaaactgaccccgcaactgacg
ctggatgccggtgcgcgttacagcaccgtcaattttgattccaacgatcactacgtcacc
ggcagcaatggcgatgacagcggcagcgccagctaccatcagtggttgccggccggctca
ctcaattatgccgtcagccgcggctggaacctgtatctttccgccggtcgcggtttcgaa
accccgaccatcaacgagttgtcctatcgccccggcgaccaaagcgggctcaatttcggc
ctgaaaccggcaaccagcgatacggtggagtttggcagcaaaacgcgtatcggcaacggg
ttgttgaccgccgccgttttccagaccgacaccaagaatgaaattgtcgtcgatgagagc
agcaacgggcgcaccagctacaaaaacgccgggcaaacccgtcggcgcgggctggagttg
gcgctggaccagcagtttgcctacgattggcggctgcaattggcctggacgctgctggat
gcgcgctaccgggatgacgtgtgcggcgacagccagtgtacggaggccaataaagtgcca
agcggcaaccgcatgccgggcatcgcacgcaatatggggttcgcttccttcgcctgggcc
ccgccggaaggctggtatgccggtgcggaggtgcgctacatgagcgacatccaggtgaat
gatgaaaacaccgaacaggcaccgtcctataccaccgtggggttgaataccggttaccgc
tatccggtagggaactggatgcttaacgttttcggccgcgtggacaacctgtttgaccgc
caatatgttggctcggtcatcgtcaatgaaggcaacggccgttattacgaaccggcgccg
ggcaggaactggggcggcggcgtgagcgtctcttactccttcgagtaa
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