Serratia plymuthica 4Rx13: SOD_c31410
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Entry
SOD_c31410 CDS
T02710
Symbol
nfo
Name
(GenBank) putative endonuclease 4
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SOD_c31410 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srl03400
]
SOD_c31410 (nfo)
Enzymes [BR:
srl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
SOD_c31410 (nfo)
DNA repair and recombination proteins [BR:
srl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SOD_c31410 (nfo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AGO56109
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All DBs
Position
3517815..3518654
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AA seq
279 aa
AA seq
DB search
MKFVGAHVSASGGVDQAVIRAHELEATAFALFTKNQRQWKAAPLPAEVIDKFKSACAQYG
YGPGQILPHDSYLINLGHPVTEALEKSREAFLDEMQRCEQLGLTLLNFHPGSHLMQIDED
KCLARIAESINIVLDKTVGVTAVIENTAGQGSNLGFRFEHLAAIIDGVEDKSRVGVCIDT
CHAFAAGYDLRTEETCEQTFKALGDVVGFNYLRGMHLNDAKSEFGSRVDRHHSLGEGNIG
KTVFSYIMSDSRFDNIPLILETVNPDIWAEEIAWLKAQQ
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtcggtgcacatgtcagcgcgtcaggcggcgtggatcaggcggttatccgc
gcgcacgaattagaggcgaccgcgttcgccctgttcaccaaaaatcagcgtcaatggaaa
gccgcaccactgccggcagaggtgattgataaattcaaaagcgcctgcgcgcagtacggt
tacggcccagggcaaatcctgccgcacgacagctatctgattaatctcggccacccggtg
accgaagcgttggaaaaatctcgcgaggcgtttctggatgaaatgcagcgctgcgaacaa
ctcgggctgacgctgttgaacttccaccccggcagccacctgatgcagattgatgaagac
aaatgcctggcgcgcattgctgaatccatcaacatcgtgctggataaaaccgtcggcgtg
acggcagtgattgaaaacaccgccggccagggcagcaatctgggcttcaggttcgaacac
ctggcggcgatcattgacggcgtggaagacaaaagccgcgtcggcgtgtgcatcgatacc
tgccatgcctttgccgccggttacgatctgcgcaccgaagaaacctgcgaacagaccttt
aaagcgctgggtgacgtggtgggcttcaactacctgcgcggcatgcatctgaacgacgcc
aagagcgagttcggcagccgagtcgatcgccatcacagcctgggcgaaggcaatatcggc
aaaacggtattcagttacatcatgagcgactcgcgtttcgacaatatccccctgattctc
gaaaccgtgaacccggatatctgggcggaagaaatcgcctggctgaaagcgcaacaataa
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