Serratia plymuthica 4Rx13: SOD_c36510
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Entry
SOD_c36510 CDS
T02710
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
srl03009
]
SOD_c36510 (srmB)
Enzymes [BR:
srl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOD_c36510 (srmB)
Ribosome biogenesis [BR:
srl03009
]
Prokaryotic type
rRNA helicases
SOD_c36510 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_11
AAA_22
UPF0302
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGO56609
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All DBs
Position
4118463..4119788
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AA seq
441 aa
AA seq
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MTATNFSELDLDERLIKALSDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLL
PVLQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RNQTLLFSATLEGDAIREFAERILKEPVEIEADPSRRERKKILQWYYRADDVQHKTAILV
HLLQQPDVLKSVIFVRKRERVHELAAWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVN
VLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKVGRYLNEPLKARVIDELRPSTKVPSEKSNGKPSKKVLAKRAEDKEKNKEKAKVKVRHR
DAKNVGKRRQPKAKPESNGAK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaccaatttttccgaactcgatctcgatgaacgcctgataaaagccctgagc
gataaaggctacgaacgcccgaccgccattcaagccgaggctatcccacctgcgatggat
gggcgcgacgtattgggttcggcgccaaccggcaccggcaagaccgccgcatttttgctg
ccggtattgcagcatctgctggactttccacgcaagaagtccggcccaccgcgcgtactg
atcctcaccccgacgcgcgaactggcgatgcaggtagccgaccaggcacgtgaactggct
gcccatacttcgctggatatcgccaccatcaccggcggcgtcgcctatatgaaccacgcg
gaagtcttcagcgaaaaccaggacgtggtggtcgccaccaccggtcgtctgctgcaatac
atcaaagaagaaaacttcgactgccgcgcggtagaaacgctgatcctcgatgaagccgac
cgcatgctggacatgggcttcgcgcaggatatcgaaaccatttccgccgaaacccgctgg
cgcaaccagaccctgctgttctccgcgacgctggaaggcgatgccatccgcgaattcgcc
gagcgcattctgaaagagccggtggaaattgaagctgacccttcacgccgcgaacgcaaa
aagatcctgcagtggtactaccgtgccgacgacgtgcagcacaaaaccgccattctggtg
catttgctgcaacagccggacgtgctgaagtccgtgatcttcgtccgtaaacgcgagcgc
gtgcacgagctggcggcctggctgcgcgaggctggcatcaacacctgctatctcgaaggc
gaaatggtgcaggccaagcgcaacgaagcggtaaaacgcatgatggacggccgcgtcaac
gtgctggtcgccaccgacgtcgctgcccgtggtctggatatcctggatatcacccacgtg
ttcaacttcgacatgccgcgtactgcggacacctatctgcaccgcatcggccgcaccggc
cgtgccgggcgcaaaggtaccgcgatttctctggttgaggcgcacgatcacctgctgttg
ggcaaagtcggccgttacctgaacgaaccgctgaaagcgcgggtgatcgacgagctgcgt
ccgtcaaccaaagtgccaagcgaaaagagcaacggcaaaccttcgaagaaggtgctggcc
aaacgtgcggaagacaaagaaaagaacaaagaaaaagccaaggtgaaagtacgtcatcgc
gatgcgaaaaacgtgggcaaacgtcgccagccaaaggccaagcctgagagcaacggcgct
aaataa
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