Serratia plymuthica 4Rx13: SOD_c37400
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Entry
SOD_c37400 CDS
T02710
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03030
DNA replication
srl03430
Mismatch repair
srl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOD_c37400 (dnaE)
03430 Mismatch repair
SOD_c37400 (dnaE)
03440 Homologous recombination
SOD_c37400 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srl03032
]
SOD_c37400 (dnaE)
03400 DNA repair and recombination proteins [BR:
srl03400
]
SOD_c37400 (dnaE)
Enzymes [BR:
srl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SOD_c37400 (dnaE)
DNA replication proteins [BR:
srl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SOD_c37400 (dnaE)
DNA repair and recombination proteins [BR:
srl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SOD_c37400 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGO56693
LinkDB
All DBs
Position
complement(4208608..4212159)
Genome browser
AA seq
1183 aa
AA seq
DB search
MRTIALTRVQRAEPPSFRYLDMAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPAL
AITDFTNLCGLVKFYGSAHGAGIKPIIGADFHVQSEVLGDELAQLTVLAANNDGYQNLTL
LISRAYQRGYGAAGPIIDRDWLIEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQ
QYFPDSYYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAI
HDGFTLDDPKRPRNYSTQQYMRSADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLP
QFPTGDMTTEDFLVLKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPG
YFLIVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM
PDFDVDFCMEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI
SKLVPPDPGMTLEKAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP
TKITDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKS
GLEPIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR
PGPLQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAG
YTLGGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKS
HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG
QYHFHVNDEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRR
ILEKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQS
YANVPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAV
GLVIASRVMVTKRGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFD
DFSGGLKMTARELMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL
YYQREDARAKLRFGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcacgatagcgttaacccgggttcagcgtgctgagccccctagtttcaggtatctg
gatatggccgaacctcgttttattcacctgcgcgttcatagtgactactccatgattgat
ggattagccaagatcgggccgttggtgaaaagagccgccgcgttagccatgcctgctttg
gcaattaccgatttcaccaacctgtgcgggttggtgaagttctatggcagtgcgcatggc
gccgggatcaaaccgatcatcggcgcggattttcatgtgcaaagcgaagtgctgggcgat
gaactggcgcagctcaccgtactggccgccaataatgacggttatcaaaacctgacgctg
ctgatttcccgcgcttaccagcgtggttacggcgccgcaggcccgattattgaccgcgat
tggctgatagaacaccgtgaggggttaatcctgctttctggtgcccgtcagggggacgtc
ggcaaatttttgctgcgcggtaaccagcaacaggtagatcagtgcctggacttctatcag
caatatttcccggacagctattatctcgaactgatccgcacaggccggccggacgaagaa
aactacctgcatgcagccgtagcgctggcgaccgaacgtgggttgccggtggtggccacc
aacgacgtgcgttttctggtagaggatgactttgacgcccatgagatccgcgtcgccatc
catgacggtttcacgcttgacgatcccaaacgcccgcgcaactacagcacgcagcaatat
atgcgcagcgcagacgagatgtgcgagctgtttgccgacatcccggaagcgctgctcaac
agcgtcgaaatcgccaagcgctgcaatgtcaccatccgtctcggcgaatacttcctgcca
cagttcccgaccggtgatatgaccaccgaggatttcctggtactcaaatcgaaggaaggg
ctggaagagcgcctggaattcctgttcccggatccggaagtgcgcgcacagcgccgccct
gaatacgacgaacgtctggatattgagctgaaagtgatcaaccagatgggcttcccgggc
tacttcctgatcgtaatggaattcatccagtggtcgaaagataacgatgtgccggtaggg
ccgggacgcggttccggtgccggttcactggtggcctatgcgctgaaaatcaccgatctt
gatccgctggaatttgatttgctgttcgaacgtttccttaacccggaacgtgtttcgatg
cccgacttcgacgtcgacttttgcatggaaaaacgcgatctggtgattgagcacgtggcg
gagatgtatggccgcgaggcggtatctcagatcattaccttcggcaccatggcggccaaa
gcggttattcgcgacgtgggccgcgtgctgggtcacccctatggtttcgtcgatcgcatc
tccaagctggtgccgcccgatccgggcatgacgctggaaaaggcatttgccgccgaaccg
caactgccggaaatttacgaggctgacgaagaagtcaaagcgctgatcgacatggcgcgc
aagctggaaggggtgacgcgtaacgccggtaagcacgccggcggcgtggttattgcgcct
accaagatcaccgacttcgcgccgctgtactgcgatgccgaagggaatcacccggtcacc
cagtttgacaagaatgatgtggaatacgccgggctggtgaagttcgacttccttggcttg
cgcaccctgaccatcatcgactgggcgctggggatgatcaatgcccggcgagcgaaaagc
gggctggaacccattgatatcgcggctattccgctcgaagacaaaaaaagcttcgatatg
ctgcagcgctcggaaaccactgcggtattccagctcgaatcacgcggcatgaaggatctg
atcaagcgcctgaaacctgactgtttcgaagatatgatcgcactggtggcgctgttccgc
ccgggcccgttgcagtcaggcatggtggataacttcatcgaccgcaaacacggccgcgaa
gagatttcttacccggatatccagtggcagcatgagtcgcttaagccggtgctggaaccg
acctatggcatcatcctgtaccaggaacaggtcatgcagattgcccaggtgctggccggc
tatacgctgggcggcgcggacatgctgcgtcgtgcgatgggtaaaaagaacccggttgag
atggccaagcagcgcggcggtttcgaagatggggcaaaatcgcgcggcatcgacggtgaa
ctgtcggtaaaaatcttcgatctggtagagaaattcgccggttacggctttaacaagtcg
cactccgccgcctatgcgctggtgtcctaccagacgctgtggttaaaggcccactacccg
gccgagtttatggcggcggtaatgaccgccgatatggacaacaccgacaaggtcgtgggg
ttggtggatgaatgctggcgcatgggcctgaaaatcctgccgccggacattaacagcggc
cagtaccatttccacgtcaacgatgaaggcgagatcgtttacggtatcggcgcgatcaaa
ggcgtcggagaagggccgattgaagccattctcgaagcgcgaaacagcggggagcagggc
tactttaaagacctgttcgatctctgcgcacgctccgatgtcaaaaaactcaaccgccga
attctggaaaaactgatcatgtccggggcattcgaccgccttgggccgcatcgcgccgcg
ctgatgagctcactgggcgacgcgttgaaagcagccgatcagcatgcgaaagccgaagct
atcggccaggtggacatgtttggcgtcctggcggaagcgccggaacaagtggagcaatcc
tacgccaatgtgccccgctggcaggagcaggtggtgctggatggcgaacgggagacgttg
gggctatacctgaccggccacccgatcacccagtacttgaaggagatcgaacgttacgcc
ggtggccagcgtttgaaagatatgcacccgacggatcggggcaaaatgacgaccgccgtt
gggctggtgatcgcctcgcgggttatggtcaccaagcgcggtaatcgcatcgggatttgt
acgctggatgaccgttcgggccgtctggaagtgatgttattcaccgatgcgttagaaaaa
taccagcatttgttggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgat
gactttagcggcgggcttaaaatgacggcccgcgaactaatggacatcagtgaagcccgt
gaaaaatacgctcgtgggcttgctatctcgctgacggacaggcaaattgatgaccagctt
ttgaaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctt
tactatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtgacg
cccaccgaccgcttgttgatagatttgcggactttggtaggtaatgagcaggtggaactg
gaatttgactaa
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