Serratia plymuthica 4Rx13: SOD_c38880
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Entry
SOD_c38880 CDS
T02710
Symbol
yiaJ
Name
(GenBank) HTH-type transcriptional regulator YiaJ
KO
K21602
IclR family transcriptional regulator, regulator of plant utilization
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
srl03000
]
SOD_c38880 (yiaJ)
Transcription factors [BR:
srl03000
]
Prokaryotic type
Helix-turn-helix
IclR family
SOD_c38880 (yiaJ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
MarR_2
HVO_A0261_N
TrmB
Gp10-like
MarR
Rio2_N
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
AGO56839
LinkDB
All DBs
Position
complement(4383104..4383922)
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AA seq
272 aa
AA seq
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MSLKAVDEKDDKKDKPLGSQSLFRGLQLIEILSNFPNGCPLAHLSELAGMNKSTVHRLLQ
GLHTSGYVTQAPSPGSYRLTTKFISIGQKALSSLNIIHVAAPHLEQLNLEVGETVNFSSR
EDDHVILIYKLEPTTGMMRTRAYIGQHMPLYCSAMGKIFMAYGNSDYPEHYWQTHQQEIQ
TLTRNTITELPKMYEELADIRQRGMAMDREENELGVSCVAAPVFDIQQRVPYAVSVSLPT
AKLQQIGVKALIKPVLATAQRISQELGFVIPA
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaaagctgtcgacgagaaagatgacaagaaagataaacccctgggcagccaa
agcctgttccgtggtttgcaactgatagagatcctgagcaatttccctaatggctgcccg
ctggcgcacctgtccgagctggcgggaatgaacaaaagcactgtccatcgtctgttgcag
ggattgcataccagcggctatgtgactcaggcgccgtcgcctggcagctatcgcctgacc
accaagtttatttccatcggccagaaggcgctttcttcgctgaatatcatccacgttgcc
gcgccgcatctggaacagctgaatctggaagtgggggagacggtgaatttctccagccgg
gaagatgaccacgtcattctgatctacaagctggagccgaccaccggcatgatgcgcaca
cgtgcttatatcggccagcatatgccgctgtattgctcggcgatgggcaagattttcatg
gcctacggcaacagcgactatcccgaacactattggcaaacccatcagcaagagattcag
acgttgacgcgcaataccattaccgagttgccgaagatgtatgaggaattggccgatatc
cgccagcgcggcatggcgatggatcgtgaagagaatgagctgggcgtgtcctgcgtggcg
gcgccggtatttgatatccagcagcgggttccctatgcggtgtcggtgtcgctgccgacc
gccaaactgcaacagattggcgtgaaggccctgatcaagccggtgttggcgacggcacag
cgcatttcccaggaattggggtttgtgatcccggcttga
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