Serratia plymuthica 4Rx13: SOD_c39340
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Entry
SOD_c39340 CDS
T02710
Symbol
mrcB
Name
(GenBank) penicillin-binding protein 1B
KO
K05365
penicillin-binding protein 1B [EC:
2.4.99.28
3.4.16.4
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl00550
Peptidoglycan biosynthesis
srl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SOD_c39340 (mrcB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
srl01003
]
SOD_c39340 (mrcB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
srl01011
]
SOD_c39340 (mrcB)
Enzymes [BR:
srl01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
SOD_c39340 (mrcB)
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SOD_c39340 (mrcB)
Glycosyltransferases [BR:
srl01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
SOD_c39340 (mrcB)
Peptidoglycan biosynthesis and degradation proteins [BR:
srl01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
SOD_c39340 (mrcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
PBP1_TM
UB2H
Transpeptidase
UvrB_inter
Motif
Other DBs
NCBI-ProteinID:
AGO56885
LinkDB
All DBs
Position
complement(4437687..4440194)
Genome browser
AA seq
835 aa
AA seq
DB search
MAGDDREPIGRKGKQPKRTASGKPPRRRRDDDYDDYEEDEQQDDDDEYEDEEESVPRKVK
ATPPRKKRRWLGLLIKLILVVAVLLAIYGVYLDSQIRSRIDGKVWQLPAAVYGRMVNLEP
GMPYSKKEMVDLLEGMQYRQVSRMTRPGEFTVQANSIEMLRRPFDFPDGKEGQIHARLDF
QNNRLAKIENMENQRNFGFFRLDPRLITMLQSPNGEQRLFVPRAGFPDLLVDTLIATEDR
HFYEHDGISPYSIGRAMLANLTAGRAVQGGSTLTQQLVKNLFLTNERSLWRKVNEAYMAL
LVDYRYSKDRILELYLNEVYLGQSGSDQIRGFPLASLYYFGRPVDELSLDQQALLVGMVK
GASLYNPWRNPTLALERRNLVLKLLQNQGVIDAELYNMLSARPLGVQPKGGVITPQPAFM
QMVRQELQAKLGDKVNDLSGVKIFTTLDPVSQDAAEKAVEDGIPALRAARHVKDLEAAMV
IVDRFSGEVRAMVGGANPQFAGFNRAMQARRLVGSLAKPPTYLTALSEPDKYRLNTWLAD
QPLSLKLPNGSLWQPNNYDRKFRGQVMLVDGLAFSLNVPTVNLGMAVGLDQISATLQRLG
IPKAEINPVPSMLLGAIGLTPMEVAQEYQTIASGGNRAPLSAVRSVIAEDGSVLYQSFPQ
AERMVPAQAAYLTLYAMQQGVARGTSRSLSVKFPNYNLAAKTGTTNDLRDSWFAGIDGKE
VAIAWVGRDNNGPAKLTGANGALTLYRRYLENQTPLPLMLQPPEGINQIGIDSAGNFVCG
EGGRSIPVWTDNPQGLCQASQAAQQQQQQQQQPAGEQKDADGVAGWIKDMFGQGQ
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggctggggatgaccgcgagcccatcgggcgcaaagggaaacaaccaaaacgcaccgcg
tcgggcaaaccgccgcgccgtcgccgagacgacgattatgacgattacgaggaagacgag
cagcaagatgacgatgatgaatatgaagacgaggaggaaagcgtgccgcgtaaggtaaaa
gcgactccgccgcgtaaaaaacgccgttggcttggcctgcttatcaaactgattctggtg
gtcgcggtgctgttggcgatctacggcgtgtacctggattcccagatccgcagccgcatt
gacggcaaggtctggcagttgccggccgcggtctatggccgcatggtcaacctggaaccg
ggcatgccgtacagcaagaaggaaatggtcgatctgctggaaggtatgcaataccgccag
gttagccgcatgacccggccgggcgagttcaccgtgcaggccaacagcatcgagatgctg
cgccgtccgtttgacttcccggatggcaaagaggggcaaatccatgcccgtctggatttc
cagaacaaccgtctggcgaaaatcgaaaacatggagaaccagcgtaacttcgggttcttc
cgcctcgatccgcgcctgatcaccatgttgcagtcaccgaacggtgaacagcggctgttc
gtgccgcgcgccggtttcccggacctgctggtggatacgctgattgccaccgaagaccgc
catttctacgagcatgacggcatcagcccttactccattggccgtgcgatgctggcgaac
ctgaccgccgggcgtgcggtgcagggcggcagtaccctgacgcagcagttggtgaagaac
ctgttcctgaccaacgaacgctcgctatggcgtaaagtcaacgaagcctacatggcgctg
ctggtggattaccgttacagcaaggaccgtattcttgagctgtatctgaacgaggtgtac
ctcggccagagcggtagcgaccagatccgcggtttcccgctggccagcctgtattacttc
ggccgcccggtggacgaactgagtctggatcagcaagcattgctggtggggatggtgaaa
ggcgcgtccttgtataacccgtggcgcaacccgacgttggcgctggagcgccgcaatctg
gtgctcaagctgttgcaaaatcagggggttatcgacgccgagctgtacaatatgctcagc
gcgcggccgctgggcgtgcagccgaagggcggggtgatcacgccgcagccggcgtttatg
cagatggtgcgtcaggaactgcaggccaagttgggcgacaaggtgaacgacctgtccgga
gtgaaaatcttcactacgctggatccggtttctcaggatgcggcggaaaaagcggtcgaa
gacggcattccggcgctgcgtgccgcccgccacgtgaaagatctggaagcggcgatggtg
attgtcgatcgcttcagcggtgaggtgcgcgccatggtcggcggtgccaatccgcagttc
gccggttttaaccgtgcgatgcaggcgcgccgcctggtcgggtcgctggccaagccgcca
acctacctgaccgcgctttccgagccggacaaataccgcctgaatacctggctggcggac
cagccgctgtcgctgaaactgccgaatggcagcctgtggcaaccgaacaactacgaccgc
aaattccgcggacaggtgatgttggtggatggcctggccttctcgctcaacgtgccgacg
gtgaatttgggtatggcggtcgggctggatcaaatcagcgccaccttgcaacgtttgggt
attcccaaagcggaaatcaatccggtgccttcgatgctgctgggggcgattggcctgacg
ccgatggaagtggcgcaggaataccaaaccatcgccagcggcggtaaccgcgcgccgctg
tcggcggtgcgttcggtgatcgcggaagacggttcggtgctgtaccagagcttcccgcag
gcggaacgcatggtaccggctcaggccgcttacctgacgttgtatgcgatgcaacagggc
gtagcgcgcggaacctcccgttctctgtcggtgaagttccccaactacaacctggcggcg
aagaccggtaccaccaacgatctgcgcgacagctggtttgccggtatcgacggtaaagaa
gtggctatcgcctgggttggccgtgacaacaacggcccggccaagctgaccggcgccaac
ggtgcgttgactctgtatcgccgctatctggaaaaccagacgccgctgccgctgatgctg
cagccgccggaaggcatcaaccagattggcatcgactccgccggtaactttgtctgtggc
gagggcgggcgcagcatcccggtgtggaccgataatccgcaagggctgtgtcaggcaagc
caggccgctcagcagcagcaacaacagcagcaacagccggcgggtgagcaaaaagacgct
gacggcgtcgccggctggatcaaggatatgttcggccagggtcagtaa
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