Serratia plymuthica 4Rx13: SOD_c42150
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Entry
SOD_c42150 CDS
T02710
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
srl
Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srl03019
]
SOD_c42150 (csrD)
Messenger RNA biogenesis [BR:
srl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SOD_c42150 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Hrs_helical
RH1
Motif
Other DBs
NCBI-ProteinID:
AGO57164
LinkDB
All DBs
Position
complement(4753191..4755122)
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AA seq
643 aa
AA seq
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MRFTTKLSALITLLVALAMFLMLMGCSYSFFYVTQDRLERRFDSLVTSLDQSMLHGSPDE
QQQWLPLVMRPLGIVAVSVDSDRTNLFTYKLPALKLPWDSLNGYRQVSRPLLQHPGSSLH
ITYIDPFVSDVRSLQSTGAVTLSIVAMVVILLFSLRWLREQAEGEDLLERRARRILNGER
ENVMQGDVREWPANVSGALDRLLADLAEAREERSRVDTLIRAFAAQDAKTGLNNRLFFDN
QLATQLEEQGSHGIVMMVRLPDFDTLRETHGNTAVQELMYSLVNLLSTFVMRYPAALLAR
YFHSDFTVLLPHRTLKEADGIAAQLVNAIDSLPSTALIDREAFLHIGIVAYRSGQTPEQV
IDYAEQATRHATLQGENGWYVYDSQVPEKGRGSVKWRTLLEQVLVRGGPRLYQKPAVTVE
GDVHHREIMSRIYDGTQELLPSEYMPLVQQLGLAESYDRQHISRILPLLALWPEETLAFT
LCVDSLLQRSFQRWLRDTLLQCEKNHRRRILIELAEADVCQHIDRLRPVLRLLSGLGCRL
AVSQAGLTVVSASYIKSLPVEIVKLHPGLVRGIDKRDENQLFVQSLTGACEGTRAKVFAA
SVRTSNEWQTLKERGILGGQGDFFAPPEPIDVGRKKYSRRYRV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccaccaaactgtcagcgctgatcaccctgcttgttgctctggcgatgttt
ttgatgctgatggggtgctcatacagtttcttctacgtgactcaggatcgtctggagcgc
cgcttcgattcgctggtgacgtcgctcgatcagtcaatgctgcatggttctcccgatgaa
cagcaacaatggttgccgctggtgatgcgcccgcttggtatcgtggccgtcagcgtcgat
agcgaccgcaccaatctcttcacttataaactgccggctttgaagttgccctgggattcg
ctgaacggctaccggcaggtttcccggccgctgctgcaacacccaggcagttcgctccac
attacctatatcgatccgttcgtcagcgatgtgcgctcgctgcaatccaccggggctgtg
accttgtcgattgtcgcgatggtggtgattttgttgttcagcctgcgctggctgcgtgag
caggccgagggggaggatctgctggagcgccgtgcgcgccgcatccttaacggtgaacga
gaaaacgtgatgcagggcgatgtgcgcgaatggccggccaacgtcagcggtgcgcttgat
cgcctgctggcggatttggcggaagcgcgtgaagaacgcagccgggtcgatacgctgatc
cgcgcctttgccgcacaggacgcaaaaaccgggctgaacaaccgattgttttttgataac
caactggccactcaattggaggagcaaggctcgcacggcattgtcatgatggtgcggtta
cccgatttcgatacgctgcgggaaacccacggcaacacggcggtacaggaactgatgtac
tcgctggtcaatttgctgtcgaccttcgtgatgcgctatccggcggcgctgttggcgcgc
tatttccacagtgatttcaccgtgctgttgccgcaccgcacgttgaaagaggcggacggc
atcgccgcgcagttggtgaatgccattgactcattgccttcaacggcgcttatcgatcgc
gaagcgttcttgcatatcggcatagtggcgtatcgcagtgggcaaaccccggaacaggtg
attgattacgcggagcaggcaacgcgtcacgccacgttacagggggaaaacggctggtac
gtttacgacagccaggtgcccgaaaaagggcgcggcagcgttaaatggcgtaccctgttg
gaacaggtattggtacggggcggcccacgcctgtatcagaaaccggcggtaacggtggaa
ggggacgttcatcaccgcgagatcatgagccggatttatgatggaacccaagagttgcta
ccctcggaatatatgccgctggtgcagcagttggggctggccgaaagttacgatcgtcag
catatcagccgcattcttcccttgctggcgttgtggccggaagagacgctggcatttacg
ctgtgcgtcgattcattattgcagcgcagtttccagcgctggctgcgcgataccctgcta
cagtgtgaaaaaaaccaccgtcgacgaattctgattgaacttgcagaggcagacgtgtgt
caacatatcgaccgtttgcgaccggtgctgagattgctttcaggattggggtgtcgtctt
gccgtttctcaggcggggttaaccgtggtcagtgcctcttatatcaagtccttaccggtg
gagatcgtcaaactccacccgggtttagtgcgggggattgataagcgtgatgaaaatcag
ctgttcgttcagagcctgaccggcgcctgcgaaggcacccgtgccaaggtgtttgccgcc
agcgtgcggacgagtaacgaatggcagacgttgaaagaacgcgggatccttggcgggcaa
ggtgacttttttgcgccgccggagccgatagacgtggggcgtaaaaaatattcgcgtcgt
tatcgcgtttaa
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