Salinibacter ruber M8: SRM_00044
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Entry
SRM_00044 CDS
T01209
Symbol
deaD
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srm
Salinibacter ruber M8
Pathway
srm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRM_00044 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srm03019
]
SRM_00044 (deaD)
03009 Ribosome biogenesis [BR:
srm03009
]
SRM_00044 (deaD)
Enzymes [BR:
srm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SRM_00044 (deaD)
Messenger RNA biogenesis [BR:
srm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SRM_00044 (deaD)
Ribosome biogenesis [BR:
srm03009
]
Prokaryotic type
rRNA helicases
SRM_00044 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SWI2_SNF2
Flavi_DEAD
CMS1
AAA_30
Osmo_CC
Astro_VPg
Motif
Other DBs
NCBI-ProteinID:
CBH22965
UniProt:
D5H4L0
LinkDB
All DBs
Position
42267..43703
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AA seq
478 aa
AA seq
DB search
MAADISQSKYTNVIDLTSEAQQERRRDEVGSELREPDPPLDEVTVDALSGHMEQAVHAAG
WTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRE
LARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVVIGTPGRILDHIKK
DNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFL
DDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESALIFANTKREVSYLN
KFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDV
PQDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMANTYDIELEKAELPADPHSEAR
ELLQERYANAEAPANGEEPGVEDFVPLVKELSDEQPELLASLITELYAEAKTEDEEEK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgatatttcgcagagcaagtacacgaacgtcatcgacctgacttctgaggcc
caacaggagcggcggcgcgacgaggttgggtcggagctgcgcgagccggacccgcccctg
gacgaggtcacggtcgacgcgctgtccgggcacatggagcaggcggtgcacgccgccggc
tggacggagctgatggacgtgcagcgcaaggccatcccctacaccctcgacgggcgcgac
ctgatcgtgcagtcgcagaccggctcgggcaagaccggcgccttcctgctgccgctgttc
gacctggtgaacccggacaaggaggaacagcaggttctcatcctcacgcccacccgggag
ctggcgcggcagatccacgaggagttcgagcagatgaaaatcgcgacgccgcgcacgaac
cgcatggaggcggtcctcatttacggcggcgtcgggtaccagccgcagatcgacggcctg
aagaacggcgcgcaggtcgtcatcggcacgccgggccgcatcctcgaccacatcaagaag
gacaacttcgacgccagcaccctccggatgctcgtgctcgacgaggccgacgagatgctg
tcgatgggcttctacccggacatgaaggacatcgtcgagcacgtgccgggggatcgggtc
tcgtacatgtacagcgccaccatgccgccgaaggtgcggtccgtggcgcgcgaattcctg
gacgacccgggcttcctctcgctcagcaccgacaaggtgagcgtggaggagaacgagtac
cgctactacctggtcaacccgatggacaaggatcgggtgatggcgcagctcctggagctg
gaggagccggagtcggccctcatcttcgccaacacgaagcgggaggtgagctacctcaac
aagttcctctcgaacaagggttacgacatcgacgagatgtccggcgacctctctcagcgc
gaccgggaggaggcgctcgatcgactccgagaagggaagctccgcctgctggtggcgacg
gacgtggcggcccgcggcatcgacgtgtccgacctgagccacgtcttcatctacgacgtg
ccccaggaccacgagtacatcatccaccgctccggccgcacggcgcgggccggcgaagag
ggcacgacgatcgtcctctccacccacgaggacgagtacgagctcaagcggatggctaac
acctacgacatcgagctcgagaaggccgagctgccggccgatccgcacagcgaggcccgt
gagctgctccaggagcgctacgcgaacgccgaggccccggccaacggcgaagagccgggc
gtcgaggacttcgtcccgctcgtgaaagagctttccgacgaacagccggaactgctggcg
tccctcatcacggagctgtacgccgaagcgaagacggaggacgaggaggagaagtga
DBGET
integrated database retrieval system
