Salinibacter ruber M8: SRM_00062
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Entry
SRM_00062 CDS
T01209
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srm
Salinibacter ruber M8
Pathway
srm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SRM_00062 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srm03400
]
SRM_00062 (mfd)
Enzymes [BR:
srm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SRM_00062 (mfd)
DNA repair and recombination proteins [BR:
srm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SRM_00062 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBH22983
UniProt:
D5H4M8
LinkDB
All DBs
Position
complement(61753..65649)
Genome browser
AA seq
1298 aa
AA seq
DB search
MGKTIRDYRPNGESTRGRAHPVSRETCPPFSSPPSTLDRAFHVKHLRLFATRCVNAQQRR
NLLARLRRWFFRSESTCHPHSGLPPRPSLMLRRRAFGVWGLRMREGARGRDPRDQSVGIA
LSPTRPLPRGSSLSGTSERSCTLEDDRSLESENPPPVSLTAIANRIETTAAVSRLRAWTA
EAQRGDRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLEQLVGEP
DEAILRVPATQKTPYDPDQIADSTPLIERADALQRLAEGFEGILVTSVPAVGELVPPPQA
VQRETLTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFARRGGILDVFPYAGTYPIRI
DFFGDEVNGLREFDPQTQRSVSRLTTARLVPNLEREEAARGSIALFQYLPDEAVLATLDE
AQVREGAQAQFEEAAAAYEERRAELAENDEVEQTPEDLTPPDDRFLTGDQMAAALTRHPR
LQFGTFSQSSTNGTPTDTLDLEADPQPSFSSDMDLVRKRLQKNGDRDLDTFILCDSHGQS
SRLRDLLESEIDHGWARLVVESLHQGFEWPGAGLAVFTDHQIFNRYHRPSTKQREGHADG
MNLRDIKNLTRGDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDVLYVNVHALHK
LNKYTGKEGHQPTLTKLGSEQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYAFSSDTT
WQREMEASFEFEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQD
GKQVAMLVPTTILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILI
GTHRITSDDITFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLL
GARDLSLIETPPPNRQPINTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHEVAEM
VRAMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHA
GEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAM
RDLDIRGAGSLLGAEQSGFIEDVGYETYHKILDQAVKELREEEFDDVFDGEAVPPGPETS
VDVEEDAYIPESYLRDNTERLNLYRRISDAPDETTLVDLLDEMEDRFGDAPEPVQNLLTG
ARLRLLGERLRMPKVVYKNERLFLYLPSEDADPYFYDEVFHPLLEKLTLLDREYVMKDDV
EGGLMRAIVQDVNTLDEALQVTESLLLEETKTMATVEA
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
ttggggaagacgattcgcgattatagaccaaacggggagagcactcgtggacgtgcccac
cccgtttcacgtgaaacgtgccctcccttcagttctccaccctcgacactcgaccgcgcg
ttccacgtgaaacatctgcgactcttcgccacccgttgcgtcaacgcgcaacagcggagg
aacctcctcgctcgtctgcgccgttggttcttccgaagtgaatccacttgccatccgcac
tcgggtctgcccccccgaccgtcgctgatgttgcggcgtcgggctttcggtgtttggggg
ctgcgaatgcgtgaaggggcgagagggcgcgacccacgcgaccagagtgtgggaatcgcc
ctttcgcccactcgccctctcccccggggttcctccctctcaggcacgtccgagcgaagc
tgcacgctcgaggacgaccgttctctcgaatcagaaaacccgccgcctgtgtccctcacc
gccatcgccaaccgcatcgaaaccactgcggccgtcagtcgcctccgcgcctggaccgcc
gaggcgcaacggggcgaccgctctcccgcccttcacgtgaacggggccgccgggtccctt
ccggcctttctcctctatcatctccaccgggagcctggggccccactctgcgtgctgacg
cccgacgaggacgcggcggcgtacctgcaaagcgacctggagcagctcgtcggggagccg
gacgaggcgatcctccgcgtccccgccacgcagaagacgccgtacgaccccgaccagatc
gcggactcgacgccgctcatcgagcgggccgacgccctgcagcggctggcggagggcttc
gagggcatcctcgtgacgagcgtcccggcggtcggcgagctggtgcccccgccccaggcc
gtgcaacgggaaacgctgaccgtggagaacggcgaagaaatcgcgctggaggcgctggcc
gatcggctgctggagcaggacttctcgccggtcgaattcgtggaggagcccggcgagttc
gcgcggcgcggcggcatcctcgacgtcttcccctacgccggcacctatcccatccgcatc
gacttcttcggcgacgaggtgaacggcctgcgcgagtttgacccgcagacgcagcgctcg
gtgagccgcctcaccaccgcccgcctcgtccccaacctggagcgcgaggaggcggcccgc
gggtccatcgccctcttccagtacctgcccgacgaggcggtgctcgcgacgctcgacgag
gcgcaggtgcgggagggcgcacaggcgcagttcgaggaggccgcggccgcctacgaggag
cgccgggcggagctcgcggagaacgacgaagtcgaacagacgcccgaggacctcacgccg
ccggacgatcgctttctcaccggggatcaaatggcggcggccctcacgcggcacccgcgc
cttcagttcgggacgttcagccagtcttccaccaacggcacgcccaccgacacgctcgac
ctggaggccgacccgcagccgtccttcagcagcgacatggacctggtgcggaagcggctc
cagaagaacggcgaccgcgacctcgatacgttcattctctgcgacagccacggccagagc
tcccgcctccgcgacctgctggagtcggagatcgaccacggctgggcgcggctcgtcgtg
gagtcgctgcatcagggcttcgagtggcccggggcgggcctggccgtcttcaccgaccac
cagatctttaaccgctaccaccgcccctccaccaagcagcgggagggccacgcggacggg
atgaacctccgcgacatcaagaacctgacgcggggcgacttcgtggtgcacgtggaccac
ggcatcgggcggttcgacggcatgaagaagattaccgtccgcgacaaccagcaggaggcc
gtccgcctcaattttgccgacaacgacgtgctgtacgtcaacgtccacgccctccacaag
ctcaacaagtacaccggtaaggaggggcatcagcccaccctcacgaagctcggctccgag
cagtgggaaaagaaaaagcagcggacgaaggatcaggtcaaggaggtcgcgcgcgacctc
atcaagctgtacgcgaagcggaaggcgtcggacggctacgccttctccagtgacacgacc
tggcagcgcgagatggaggcgagcttcgaattcgaggacacgccggaccaggccgaggcc
accaaggcggtgaagcgcgacatggaggagccggtgccgatggaccggctcgtgtgcggg
gacgtcggcttcggcaagaccgaggtggccgtgcgcgccgccttcaaggccgtacaggac
ggcaagcaggtggccatgctcgtgcccaccaccatcctcgcccagcagcaccacgacacg
tttagcgagcggatggagcgctttcccgtgaacgtggaggtgctctcccgcttccgctcc
cggaccgaacagtccaaggttctcgagaagctggaaaagggccaggtcgacatcctcatc
ggcacgcaccgcatcacgtccgacgacattacgttcgacgatctcgggcttctcgtcgtc
gacgaggagcagcgcttcggcgtgaagacgaaggagaagctccgcaagatgcgggaagcc
atcgatacgctcacgctgaccgccacacccatccctcgaacgctccagttttcgcttctc
ggggcgcgggacctgtcgctcatcgagacgccgcccccgaaccgccagccgatcaacacc
gagatccacaccttcgacgaggacgtcatccgcgacgcgatcgtctacgagacgagccgc
ggggggcaggtcttcttcatccacaaccgcgtgaagacgatccacgaggtggccgagatg
gtgcgcgccatggtcccgaacgtgcgggtcggcgtgggccacggccagatgagcgcgagc
gagctggaagacgtgatgctcgacttcgtcaacgagaagctcgacgtcctcgtctcgacc
tccatcatcgagaacgggctcgacatctcgaacgcgaacacgatgatcatcaaccacgcg
ggcgagcactttgggctctccgagctccaccagctgcggggccgcgtggggcgatcgcag
cggaaggcgttctgccacctcctggtgccctccgtgcacggccttaccgacgacgcccgc
gagcggctgaaggcggtggagcagttctccgacctcggcagcgggttcgacatcgccatg
cgcgacctcgacatccgcggcgccggctcgctgctgggcgccgagcagagcggcttcatc
gaggacgtcggctacgagacctaccacaagatcctcgaccaggccgtcaaggagctccgc
gaggaagagttcgacgacgtgttcgacggggaggccgtgccgcccgggcccgaaacctcc
gtcgacgtggaggaggacgcctacatccccgagtcgtacctgcgggacaacaccgagcgc
ctcaacctctaccgccgcatcagcgacgcgccggacgagacgacgctggtcgacctcctc
gacgagatggaggaccgcttcggcgacgcgccggagccggtgcagaacctcctcacgggc
gcccggctccgcctgctcggcgagcggctccgcatgccgaaggtggtctacaagaacgag
cggctcttcctctacctccccagcgaggacgccgacccgtacttctacgacgaggtcttc
cacccgctcctcgaaaagctcacgctcctcgaccgcgagtacgtgatgaaggacgacgtg
gagggcggcctcatgcgcgccatcgtgcaggacgtaaacaccctcgacgaggcccttcag
gtgaccgagtcgctgctgctggaggagaccaagacgatggccacggtggaggcgtaa
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