Salinibacter ruber M8: SRM_00373
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Entry
SRM_00373 CDS
T01209
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
srm
Salinibacter ruber M8
Pathway
srm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRM_00373 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srm03019
]
SRM_00373 (recQ)
03400 DNA repair and recombination proteins [BR:
srm03400
]
SRM_00373 (recQ)
Enzymes [BR:
srm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SRM_00373 (recQ)
Messenger RNA biogenesis [BR:
srm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SRM_00373 (recQ)
DNA repair and recombination proteins [BR:
srm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SRM_00373 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
CBH23294
UniProt:
D5H5I9
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All DBs
Position
440415..442280
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AA seq
621 aa
AA seq
DB search
MSLCLRVLHSRLCSMDVTHADPTHVLQSVFGYETFRPYQEPVVQRLVDGGDALVLMPTGG
GKSLCYQIPAMVRDGPGIVVSPLISLMQDQVDALQQVGVRAAVLNSSLGRKEREAVEHRL
TAGELDLCYVAPERATRDRFKTLLSRARPSLLAIDEAHCISQWGHDFRPEYLALADLRGD
FAQIPCIAVTATADPPTQQVVLDRLGMTDEDRFVAGFDRPNIRYVVEPKGDRPRQQLHEF
IEREHPGQNGIVYCLSRNGVETTADWLTDHGHTAVPYHAGLSDHKRSEHQDRFLREDGLI
VVATVAFGMGIDKPDVRFVAHLDVPKTLEAYYQETGRAGRDGRPATAWMAYRRGDVVRMR
QLIDDSAENDEHRWTQRHKLNALLGYCEAPDCRRKVLLNYFGEDMGGDTCGNCDNCLRPP
DTWEGTTAAQKALSCIARTGQRFGSGHVTDVLLGKDTEKIQRHDHDTVSTYGIGADRSKA
EWRSVLRQLVAKGMVEVDVMGYGALTLTEDCRPVLKGRETVAFRDGAAASASPNTTKTAA
DDPLPADGPERELFEALRERRTQIATDQDVPPYVIFNDKTLRAMVEHRPQSKSDFRALHG
VGDVKLERYGRQFLDTIREHT
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
ttgagcctctgcctccgtgttcttcatagccgcctctgctcgatggacgtcacccacgcc
gatcccacgcacgtcctccagtccgtctttgggtacgagacgttccgcccgtatcaggag
ccggtggtgcagcggctcgtcgacggcggggacgcgctcgtgctgatgccaaccggcggc
ggaaagtcgctctgctaccagattccggcgatggtgcgggacggccccggcatcgtcgtc
tcgcccctcatctcgttgatgcaggaccaggtcgacgccctgcagcaggtcggcgtgcgg
gcggcggtgctcaactccagcctgggccgcaaggagcgggaggcggtggagcaccggctc
acggcgggcgagctcgacctctgctacgtggcccccgagcgggccacgcgcgaccgcttc
aaaaccctgctctcgcgggcccggccctccctgctggccatcgacgaggcgcactgcatc
tcgcaatgggggcacgacttccgccccgagtacctggcgctggccgacctccggggcgac
ttcgcgcagattccctgcatcgccgtcacggccaccgccgacccgcccacgcagcaggtc
gtcctcgaccgcctcggcatgacggacgaggaccggttcgtggccggcttcgaccgcccc
aacatccgctacgtggtggagccgaagggggaccggccccgtcaacaactacacgagttt
atcgagcgggagcaccccggccagaacggcatcgtgtactgcctcagccgcaacggcgtg
gagaccaccgccgactggctgaccgaccacggccacaccgccgtgccctaccacgccggc
ctctccgaccacaagcgcagcgagcaccaggaccgctttctgcgcgaggacggcctcatc
gtggtggccaccgtcgcgttcgggatgggcatcgacaagcccgacgtgcgcttcgtggcc
cacctcgacgtcccgaaaacgctggaggcctactaccaggagaccggccgcgccgggcgc
gacggccgccccgccaccgcctggatggcgtaccgccgcggggacgtggtccgcatgcga
cagctcatcgacgactctgccgagaacgacgagcaccgctggacccagcgccacaagctg
aacgccctgctcggctactgcgaggcgccggactgccgccgcaaggtgctcctgaactac
ttcggcgaggacatggggggcgacacgtgcggcaactgcgacaactgcctgcgcccgccc
gacacctgggagggcaccacggccgcccagaaggcgctctcctgcatcgcccgcaccggc
cagcgcttcggcagcggccacgtgaccgacgtgcttctgggcaaggacaccgagaaaatc
cagcgccacgaccacgacaccgtctccacctacggcatcggcgccgaccggtcgaaggcc
gagtggcggtccgtcctccggcagctggtggcgaagggcatggtggaggtggacgtgatg
gggtacggcgcgctcacgctcaccgaggactgccgcccggtgctgaagggccgcgagacg
gtcgccttccgcgacggggccgcggcgtcggcctcgcccaacaccacgaaaaccgcggcc
gacgaccccctcccggccgacggcccggaacgggagctgtttgaggccctccgggagcgc
cgcacgcagatcgccacggaccaagacgtgccgccctacgtcatcttcaacgacaaaacg
ctccgtgccatggtggagcaccggccgcagtccaaaagcgacttccgcgccctccacggc
gtgggggacgtaaagctggaacggtacggccggcagttcctcgacacgatccgcgagcac
acgtga
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