Salinibacter ruber M8: SRM_02541
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Entry
SRM_02541 CDS
T01209
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
srm
Salinibacter ruber M8
Pathway
srm03420
Nucleotide excision repair
srm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SRM_02541 (uvrD)
03430 Mismatch repair
SRM_02541 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srm03400
]
SRM_02541 (uvrD)
Enzymes [BR:
srm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SRM_02541 (uvrD)
DNA repair and recombination proteins [BR:
srm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SRM_02541 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SRM_02541 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
RNase_T
AAA_30
Rv2179c-like
AAA_11
DEAD
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
CBH25462
UniProt:
D5HBQ7
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All DBs
Position
2960909..2964592
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AA seq
1227 aa
AA seq
DB search
MCRWARRAARRTSPSSRTTTANLRDGRSRPSGSCPSSAPSPDADRGPVPSRPAPRAAPLL
FPPHVSVAFRWRPRHISWTRLPLQILIASVCAAPSPPRSSSPPSAWSPRRARPSSGRVVV
PHRTRRFLPLLFLYAYAPVPSRPADWPDLNPDQRAAVTASMDPQLVVAGPGTGKTRVLVC
RAAHLIEHEAVTPSRLVLVTFTRRAAQQLTSRLAALVGPEAQHVRAGTIHHFCYKTLRAH
SAPAGVPDDFIVVDDTVTDAFWQRWYEAHERWCEANDLHSYRQVKTHVSRIKLGIDTVSG
RLTEGLRAYGEMLGDRGALDFDDLLVKTRDLLRNHPDVRADLVDETRAVLVDEFQDTDPV
QFDIIRRLGEAGAHLYCVADDDQSVYRFRGARPANLRRYIDRFDCSAERGTRHVLTTNYR
SNRSIYAVAEAVLDADERLKQRGDIRTSDAGTQPVQLVACDDPEAERTHVLRQLRDWLDD
GAERSDLAVLTRWNRRLAALERACLRAGLACETSQSEALLDTPPAQKLHALLRVVDARRR
GRPLDAPMTELLSHLLPDDTMARLRDFGERSMPDATLWTAFQTVVSNEQARRSAGLDSAT
DRLDQTYATITNLLQNTQEDGLTIGAFTRTALRQLGDPLQLLRRYADTLTDPASRPSVRQ
AGTVLDEWRRAQARDARAGDPPRLLLHHRTPQITRLWRQLVRRALDLETDPPAPLPEMQE
ALFARPADEGIPPLGADDVVLTNDLEALLRWAERTGAFSGSTDTPQILLLAPDGALPSGQ
KTLLGVDPDDVHVVDPESTFHSPSVRLVKLLQMTSGPSAPEPLFPEYVMVDLEATSTDPR
HCRVAEIGALKVRDGTVVDRFSELVQLPEDLTADERETLRTVCGLDPASDFDEARPEADV
WADFCDFADTAPLVAHNGQRYDFRVLRRLANTHEADARWATTYDLLPAAHELFPDLRRYD
AAHLRETLLDDDADTAHRALADCEDQQRILARMQAERARQRRRLAHEPLLPLLVAALTYE
SPAPEALSDDARVFLQVGHTWALRDASPAGDDLRSLLPRALPDRLRQHALYTLIDEEALL
TASAGLQPGLARRLAALFAPYADRPLRSEALADLLAHLALWGEETTPQGEDVITLSTYHS
AKGLEFERVVCMDVHDNAFPPYFARDPEERRESRRLLYVGMTRAERHLVLTYPKRERGYD
RRPTAFLDAAPDELLRVTDAAAPDAAA
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
ttgtgccggtgggcccggcgggcggcccgcaggacctcaccctcgtcacgaacgacgacg
gcaaacttacgagacggacgctcgcgcccgtccggttcgtgcccttcctccgccccgagc
cctgatgcggatcggggcccggtcccctcccgtcctgctccgcgcgccgcccctcttctt
tttcctccacacgtctctgtcgcttttcgttggcgcccgcgtcacatatcttggacgcgc
cttcccttgcagattcttatcgcctctgtatgcgccgctccgtcgccgccgcgctcctcc
tcgccgccctcggcctggagcccgcgacgggcacgtccgagtagtgggcgcgtcgtcgtt
cctcaccgcacacgccgttttctccctctcctctttctttacgcctacgcccccgtgccc
tcccgccccgccgactggcccgacctcaaccccgaccagcgggccgccgtgacggcgtcg
atggatccgcagctcgtggtggccgggccggggaccggcaagacccgcgtcctcgtgtgc
cgggccgcccacctcatcgagcacgaggccgtgacgccctcccgcctcgtcctggtcacc
ttcacgcggcgcgccgcgcagcagctcacgagccgcctcgccgccctcgtgggcccggag
gcgcagcacgtccgggcgggcaccattcaccacttctgctacaaaaccctccgcgcccat
tcggccccggcgggcgtgcccgacgacttcatcgtggtcgacgacacggttacggacgcc
ttctggcagcgctggtacgaggcgcacgagcgctggtgcgaggcaaacgacctccacagc
taccgccaggtcaaaacccacgtcagccgcattaagctcgggatcgacacggtgtcaggg
cggctcaccgaaggcctgcgggcctacggcgaaatgctcggggaccggggcgcgctcgac
ttcgacgacctgctcgtcaagacgcgcgacctgctgcgcaatcacccggacgtgcgggcc
gacctcgtggacgagacgcgggcggtcctcgtcgatgaatttcaggacaccgacccggtg
cagttcgacatcatccgccgcctcggcgaggcgggcgcccacctctactgcgtggccgac
gacgaccagtccgtctaccgcttccgcggggcgcggcccgccaacctgcgtcgctacatc
gaccgcttcgactgcagcgccgagcgcggcacccgccacgtcctcaccaccaactaccgc
tcaaaccgctcgatctacgcggtggccgaggcggtgctcgacgccgacgagcgcctcaaa
cagcgcggcgacattcgcacgtcggacgccggcacacagccggtgcagctggtcgcctgc
gacgaccccgaggccgagcggacccacgtgctccggcaactgcgcgactggctggacgac
ggggccgagcggagcgacctggccgtcctgacccgctggaaccgacgcctcgcggccctg
gaacgggcgtgcctccgggccggcctcgcctgcgagacgagccagagcgaggcgctcctg
gatacccctccggcccagaagctgcacgccctgctccgcgtcgtcgatgcccgccggcgc
ggccggccgctcgacgcccccatgacggagctgctgtcccacctgctgccggacgacacg
atggcccggctgcgcgacttcggcgagcggagcatgccggacgcgaccctctggacggcc
ttccagaccgtcgtctccaacgagcaggcccgccgcagcgccggcctcgactcggccacg
gaccgcctcgaccagacctacgccacgatcaccaacctcctgcagaacacgcaggaggac
ggcctcaccatcggcgccttcacccgcactgcccttcgacagctcggggaccccctccag
ctgctccgccgctacgccgacaccctgactgatccggcctctcgtccgtccgtccgccag
gccggcacggtcctcgacgagtggcgccgggcccaggcccgcgatgcgcgggccggggac
ccgccccgcctgctcctgcaccaccgcacgccccagatcacgcggctctggcggcagctg
gtgcggcgggccctcgacctcgaaacggatccccccgcgccgctgcccgaaatgcaggag
gccctcttcgcccgccccgccgacgagggcattcccccgctcggggccgacgacgtggtc
ctcacgaacgacctggaggcgctcctccgctgggccgagcggaccggggccttttcggga
tcgaccgatacgccccagatcctcctgctcgcgcccgacggcgccctgccgtccggccag
aagacgctgctcggggtcgacccggacgacgtgcacgtcgtggatcccgagtccaccttc
catagcccctcggtccggctggtcaagctcctgcagatgaccagcggcccgtccgccccc
gagccgctctttccggagtacgtgatggtcgacctcgaagccacgagcaccgacccgcgc
cactgccgcgtcgccgagattggggcgctcaaggtgcgagacgggaccgtggtggaccgc
ttctccgaactcgtgcagttgcccgaggacctgacggccgacgagcgcgagacgctccgc
acggtgtgcggcctggatccggcgtcggacttcgacgaggcccggcccgaggccgatgtt
tgggccgacttctgcgattttgccgacactgcacccctcgtcgcccacaacgggcagcgc
tacgacttccgcgtcctgcgccgcctcgccaacactcacgaggccgacgcccgctgggcc
acgacgtacgacctgctgcccgccgcgcacgagctgtttcccgaccttcgccgctacgac
gccgcgcacctccgcgagacgctcctggacgacgacgcggataccgcccatcgcgccctg
gccgactgtgaggatcagcagcgcatcctggcgcgcatgcaggcggagcgcgcgcgccag
cgccgccgtctggcccacgagccgctcctgccgctcctcgtggccgccctcacgtacgaa
tcccccgcccccgaggccctgtcggacgacgcccgggtctttttgcaggtggggcatacg
tgggccctgcgcgacgcctcccccgccggcgacgacctgcgctcgctcctgccccgggcc
ctgccggatcgcctccgccagcacgcgctctacacgctgatcgacgaggaggcgctgctc
acggcctctgccggcctccaacccggcctcgcccgccgcctggccgccctcttcgccccc
tacgccgaccgcccgctccggagcgaggcgctggcagacctgcttgcgcacctcgcgctc
tggggcgaagagacgacgccgcagggggaggacgtgattacgctctccacctaccacagc
gccaaggggctcgagttcgagcgcgtcgtctgcatggacgtgcatgacaacgccttcccg
ccttactttgcgcgcgaccccgaggagcgccgtgagagccgtcgcctcctgtacgtgggc
atgacgcgcgccgagcgccacctcgtgctcacctacccgaagcgggaacgcggctacgac
cggcgccccaccgccttcctcgacgccgcccccgacgagctcctgcgggtcacggacgcc
gccgcccctgacgccgcagcctga
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