Salinibacter ruber M8: SRM_02561
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Entry
SRM_02561 CDS
T01209
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
srm
Salinibacter ruber M8
Pathway
srm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRM_02561 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srm03021
]
SRM_02561 (rho)
03019 Messenger RNA biogenesis [BR:
srm03019
]
SRM_02561 (rho)
Transcription machinery [BR:
srm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SRM_02561 (rho)
Messenger RNA biogenesis [BR:
srm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SRM_02561 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Spore_III_AA
ATPase_2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBH25482
UniProt:
D5HBS7
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All DBs
Position
complement(2990047..2991237)
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AA seq
396 aa
AA seq
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MRIGRHAPLERGLSASSLIEESTMSENDNESFRRLLELIGEKKYGFMRELRPDLPKDEDD
PFMPPPLIGKFNLRDGVVIEGDLKPGRKGGMQVGWIDSVMGLPPEEWAQLKDFDQGASVY
PDEKLDLITGTDDESMRVLDLVAPLGKGQRALIVSPPRAGKTVLLKDIAAGVTENHPEVE
LVSLLVDERPEEVTDFRRTTEAQVFASSNDRGEDNHVRVSTLAMEHAKRLVETGKDVVVL
LDSLTRLGRTFNLWVDGSGRTLSGGLDAEALKVPRQIFGSARNIEGGGSLTIIATALVDT
GSRMDEVIFEEFKGTGNSEIVLDREMADKRIFPAVNLRESGTRNEERLLGEVRRKKHNQL
FRALNSRAPIEAMQALLRHLRNSPSNAHLLNELVPE
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtattggcaggcacgctccgttggagcggggcttgtcggcttcatcactcatcgaa
gaatcgactatgtcagaaaacgacaacgaatcatttcggaggctcctcgagctcatcggc
gaaaagaagtacggcttcatgcgcgagctgcggccggacctgccgaaggacgaggacgat
cccttcatgccgccaccgctcattggcaagttcaatctccgcgacggggtggtcattgag
ggcgacctgaagccgggccggaaagggggcatgcaggtgggctggatcgactccgtgatg
ggccttccccccgaagagtgggcgcaactcaaggactttgaccagggggcgagtgtatac
ccggacgagaagttggacctgattaccggcaccgacgacgagtcgatgcgggtgctggat
cttgttgccccccttggcaaggggcagcgcgccctgatcgtgtcgccgccccgggccgga
aagacggttttgctgaaggacatcgccgcgggcgtcacggaaaaccacccggaggtcgaa
ctcgtctcgttgctcgtggacgaacgccccgaggaggtcaccgacttccgccggacgacg
gaggcccaggtgtttgcctcctccaacgaccgtggtgaggacaaccacgtgcgggtctcg
accctggcgatggagcacgccaagcggcttgtcgagacgggcaaagatgtcgtggttctg
ctcgactccctcacccgtctcgggcggaccttcaacctgtgggtcgacggcagcggccgc
acgctgtccggcggcctggacgcggaggcgctcaaggtgccgcgccagatcttcgggtcg
gcgcgcaacattgagggcggtggctcgctgacgatcattgccaccgcgctggtcgacacc
ggaagccgaatggacgaggtcatcttcgaggagttcaagggcaccggcaactccgagatc
gtgctcgaccgggagatggccgacaaacgcatcttcccggccgtcaacctccgcgagagc
ggaacccggaacgaggagcgcctcctcggcgaggtgcggcgcaagaagcacaaccagctg
tttcgggcgctcaactcgcgggccccgatcgaggcgatgcaggccctgcttcggcacctg
cgcaacagcccgtccaacgcgcacctgctgaacgagctcgtccccgagtag
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