Streptomyces rubrolavendulae: A4G23_02612
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Entry
A4G23_02612 CDS
T04616
Symbol
hrpB_2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
srn
Streptomyces rubrolavendulae
Brite
KEGG Orthology (KO) [BR:
srn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srn03019
]
A4G23_02612 (hrpB_2)
Enzymes [BR:
srn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A4G23_02612 (hrpB_2)
Messenger RNA biogenesis [BR:
srn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A4G23_02612 (hrpB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_16
DUF6139
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
AOT59761
UniProt:
A0A1D8G2T8
LinkDB
All DBs
Position
3066761..3070720
Genome browser
AA seq
1319 aa
AA seq
DB search
MSTSFADLQTLLTEVSLRDAHRLGRRLEGARRIRKPEARQAVLDEIAAEASKAAARTAER
ASRVPEVTYPEQLPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGM
VGHTQPRRLAARTVAERVADELGTPLGEAVGWKVRFTDQVGSDTFVKLMTDGILLAEIQT
DRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSRHFGDA
PIVEVSGRTYPVEVRYRPLLEEDSEEPDRDQVTAICDAVDELQAEGPGDILVFLSGEREI
RDTADALLKKQLRNTEVLPLYARLSHAEQHRVFQQHAGRRIVLATNVAETSLTVPGIKYV
IDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICVRLYSEDDFLARPEF
TDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPAQKDPK
KRLTPLGRQLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPAEKQAQADQ
QHARFKDETSDFLAFLNLWRYVREQQKALSSSAFRRMCKAEYLNYLRIREWQDIYSQLRT
VAKQMGIHLNEDDAGDQQIHVSLLAGLLSHVGMKDVKTTGAESGKPSGKNEYLGARNAKF
AIFPGSALFRKPPRFVMSAELVETSRLWARVNARIEPEWIEPLAGHLLKRTYSEPHWEKD
QAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRELFIRNALVEGDWRTHHKFFADNRKL
LTEVEELEHRARRRDILVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKRRDEPELLDFER
EMLINEKAGAVTKADYPDAWRQGPLKFRVTYQFEPGADADGVTVHVPLQVLNQVVDEGFD
WQIPGLREEVVTELIRSLPKPIRRNYVPAPNFARRFLQAAAPSAEPLTTVLARELRRMVG
VPVSPDDFDWGKLPDHLKITFRIVDERRRKLAEDKDLEALRLKLRPKARQALSKAAAAAT
AGPSGSGGSLERTGLTDWTIGPLTRVFETRRAGQPVKAYPALVDQGETVAVRLFDTEAEQ
ARAMWRGTRRLIMLNIPVNPAKFASDRLTNQQKLALSRNPHGSVQALFEDCATAAADRLM
ADHGGPAWDEEAYRKLYDGVRTDLVDLTVRTIDRVQQILAAWQSCERRLKATSSLALVNN
LQDVREQLAGLVRPGFVTETGLRRLPDLMRYLVAVDRRLQQMPTSVQRDTTRMEKVHEMQ
DEYAWLLEQFPKGRPVPQEVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgacctccagaccctgctgaccgaggtctcgctgcgcgacgcc
catcggctcggccgccgtctcgaaggcgcccgccgcatccgcaagcccgaggccaggcag
gccgtgctggacgagatcgccgccgaggcgtcgaaggcggcggcccgcaccgccgagcgg
gcgtcccgcgtccccgaggtcacgtatcccgagcagctccccgtcagccagaagaaggac
gagatcctggcggcgatacgcgaccaccaggtcgtgatcgtcgccggtgagaccggctcc
ggcaagacgacgcagatcccgaagatctgcctggagctcggccggggcgtgcgcggcatg
gtgggccacacccagccccgccgactcgcggcccgcacggtcgcggagcgcgtcgccgac
gagctgggcacgccgctcggcgaggcggtcggctggaaggtgcgcttcaccgaccaggtc
ggctccgacacgttcgtgaagctgatgacggacggcatcctgctcgccgagatccagacg
gaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcccacgagcgcagcctc
aacatcgacttcctcctcggctacctcgcccagctcctgccgaagcgccccgacctcaag
gtcgtgatcacctccgcgaccatcgacccggagcggttctcgcggcacttcggggacgcg
ccgatcgtggaggtcagcgggcgtacgtacccggtggaggtgcgctaccggccgctgctg
gaggaggactccgaggagcccgaccgggaccaggtcaccgcgatctgcgacgccgtcgac
gagctccaggcggagggccccggcgacatcctcgtcttcctctccggcgagcgggagatc
cgcgacacggccgacgccctgctgaagaagcagctgcggaacaccgaggtcctgccgctg
tacgcgcgcctctcgcacgccgagcagcaccgcgtgttccagcagcacgccggccgccgc
atcgtcctcgcgaccaacgtggccgagacctccctgacggtccccggcatcaagtacgtg
atcgacccgggcacggcgcggatctcccggtacagccaccgcacgaaggtgcagcggctg
ccgatcgagccggtcagccaggccagcgccaaccagcgcaagggccgctgcggccgtacc
agcgacggcatctgcgtccggctgtactccgaggacgacttcctggcccgcccggagttc
acggacgcggagatcctccggacgaacctggcgtccgtcatcctccagatgaccgcggcc
gggctcggcgacatcgagaagttcccgttcatcgacccgccggaccaccgcaacatccgc
gacggcgtgcagctcctccaggagctcggcgcgctcgacccggcgcagaaggacccgaag
aagcgcctcaccccgctcggccggcagctcgcccagctccccgtcgacccgcgcctcgcg
cgcatggtgctggaggccgacaagaacggctgcgtccgcgaggtcatggtcatcgcggcg
gccctgtccatccaggacccgcgcgagcgcccggccgagaagcaggcgcaggcggaccag
cagcacgccaggttcaaggacgagacgtccgacttcctcgccttcctgaacctctggcgg
tacgtgcgggagcagcagaaggcgctgtcgtcgtcggcgttccgccggatgtgcaaggcg
gagtacctcaactacctgcgcatccgcgagtggcaggacatctacagccagctgcgcacg
gtcgccaagcagatggggatacacctcaacgaggacgacgcgggcgaccagcagatccac
gtctcgctcctcgcgggcctgctctcccacgtcggcatgaaggacgtgaagaccaccggg
gcggagagcggcaagccctcggggaagaacgagtacctgggcgcgcggaacgccaagttc
gcgatcttccccggctcggcgctgttccggaagccgccgcggttcgtgatgtcggccgag
ctggtcgagacgtcccggctctgggcgcgggtcaacgcgcggatcgagcccgagtggatc
gagccgctcgccgggcacctgctgaagcgcacgtactcggagccgcactgggagaaggac
caggcggcggtgatggcgtacgagaaggtgacgctgtacggcgtgccgatcgtcgcccag
cggaaggtcaactacggccgcatcgaccccgaggtgtcgcgggagctgttcatccgcaac
gccctcgtggagggcgactggcgcacccaccacaagttcttcgcggacaaccgcaagctg
ctcaccgaggtcgaggagctggagcaccgggcccgccgccgcgacatcctcgtggacgac
gagacgctgttcgacttctacgaccagcggatccccgagcacgtggtgtcgggcgcgcac
ttcgactcctggtggaagcacaagcgccgcgacgagccggagctgctcgacttcgagcgc
gagatgctcatcaacgagaaggcgggcgcggtcaccaaggccgactaccccgacgcctgg
cggcaggggccgctgaagttccgcgtgacgtaccagttcgagccgggcgcggacgcggac
ggcgtcaccgtccacgtgccgctccaggtgctcaaccaggtcgtcgacgagggcttcgac
tggcagatcccgggtctgcgcgaggaggtggtgacggagctgatccgctccctccccaag
ccgatccgccgcaactacgtcccggcgccgaacttcgccaggcgcttcctccaggcggcg
gcgccgagcgcggagccgctgacgaccgttctcgcccgcgaactgcggcgcatggtgggc
gtgccggtcagcccggacgacttcgactgggggaagctccccgaccatctgaagatcacc
ttccggatcgtcgacgagcggcgccggaagctcgccgaggacaaggacctggaggcgctg
aggctgaagctgcgcccgaaggcccgccaggccctgtcgaaggcggccgcggccgccacg
gcgggcccctcggggtcgggcgggtcgctggagcgcacgggtctgacggactggacgatc
ggcccgctcacccgggtcttcgagacccggcgggccggccagcccgtcaaggcgtacccg
gccctggtcgaccagggcgagacggtcgccgtgcgcctcttcgacacggaggccgagcag
gcgcgggcgatgtggcggggcacgcgcaggctcatcatgctgaacatcccggtgaacccg
gcgaagttcgcgtccgaccggctgacgaaccagcagaagctggccctgtcccgcaatccg
cacggctcggtgcaggccctcttcgaggactgcgccacggccgcggcggaccggctgatg
gccgaccacggcggcccggcatgggacgaggaggcgtaccggaagctgtacgacggcgtc
cgcaccgacctggtggacctgaccgtgcggacgatcgaccgggtccagcagatcctggcc
gcctggcagtcctgcgagcggcggctgaaggcgaccagcagcctggcgctggtgaacaac
ctccaggacgtgcgggagcagctcgcgggcctcgtgcggcccggcttcgtcacggagacc
ggcctgcggcggctgccggacctgatgcggtacctggtggcggtggaccgccggctccag
cagatgccgacctcggtgcagcgggacaccacccgcatggagaaggtccacgagatgcag
gacgagtacgcctggctgctggagcagttcccgaaggggcgcccggtgccgcaggaggtc
ctggacatccggtggatgatcgaggagctgcgcgtcagctacttcgcgcacgcgctgggc
acggcgtacccggtgtcggacaagcggatcgtgaaggcgatcgacgcggcggcgccgtga
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