Streptomyces rubrolavendulae: A4G23_02879
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Entry
A4G23_02879 CDS
T04616
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
srn
Streptomyces rubrolavendulae
Brite
KEGG Orthology (KO) [BR:
srn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srn03016
]
A4G23_02879 (rtcB_1)
Enzymes [BR:
srn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A4G23_02879 (rtcB_1)
Transfer RNA biogenesis [BR:
srn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A4G23_02879 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
A4G23_02879 (rtcB_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOT60016
UniProt:
A0A1D8G3L5
LinkDB
All DBs
Position
complement(3371777..3373243)
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AA seq
488 aa
AA seq
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MPAGRCGAAPVGYRGHVDLDVVEECPYRFRLERHGAMRVPGTVFASRDLLRDAGQSLRQV
ANVATLPGIVGASYAMPDIHWGYGFPIGGVAATDVAAGGVVSPGGVGFDISCGVRLLAAD
CDREALRPVLGAVMDDLGRAVPRGAGPGGVWRLDGTGELERVLRGGSRYAVERGYGVERD
LLRCEDGGVVADADVDQVGPRARERGLGQVGSLGSGNHFLEVQAVTEVYDAHAAEAYGIA
AGQVCVMIHCGSRGLGHQICSDHVRAMDRAMARYGIEVPDRQLACAPVDSPEGRAYAGAM
AAAANYARANRQLLSDAARRVLRRRAGVRLDLVYDVSHNLAKAETYRVDGEPRRLCVHRK
GATRAFPPGHPDLPGDLRDAGQPVLVPGTMSTASYVLAGVPGGDALHSACHGAGRVMSRH
QAARTVTGAALRARLEDAGIAVRPLSMRGLAEEAPEAYKDVSAVVAASEGAGLCRRVARL
EPLGVVKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgggcggtgtggggcggcccccgtcgggtaccgggggcacgtggacctggac
gtcgtcgaggagtgcccgtaccggttccgcctggaacggcacggcgccatgcgcgtgccc
ggaaccgtgttcgcctcccgcgacctcctccgggacgccgggcagtccctgcgccaggtc
gcgaacgtcgccaccctgcccggcatcgtcggcgcctcgtacgccatgcccgacatccac
tggggctacggcttccccatcggcggggtcgccgcgaccgacgtggccgcgggcggcgtc
gtctcgcccggcggggtcggcttcgacatctcctgcggggtgcggctcctcgccgccgac
tgcgaccgggaggccctgcgcccggtgctcggcgccgtcatggacgacctcggccgggcc
gtgccgcgcggcgccggaccgggcggggtgtggcggctggacggcaccggcgaactggag
cgggtcctgcgcggcggctcccgctacgccgtcgagcgggggtacggcgtcgaacgcgac
ctgctgcgctgcgaggacggcggcgtggtcgccgacgccgacgtggaccaggtcggcccg
cgcgcccgcgaacggggcctcggccaggtcggcagcctcggctccggcaaccacttcctg
gaggtccaggccgtcacggaggtgtacgacgcgcacgcggcggaggcgtacgggatcgcc
gccgggcaggtctgcgtcatgatccactgcgggtcgcgggggctgggccaccagatctgc
tccgaccacgtccgcgccatggaccgcgcgatggcccggtacggcatcgaggtcccggac
cggcagctcgcctgcgcgcccgtcgactccccggagggccgcgcgtacgcgggcgcgatg
gccgcggcggccaactacgcgcgcgccaaccgccagctcctgtccgacgccgccaggcgc
gtgctgcggcggcgggccggcgtgcgcctcgacctcgtgtacgacgtgtcgcacaacctc
gccaaggccgagacgtaccgcgtggacggcgagccgcgccgcctgtgcgtccaccgcaag
ggcgccacgcgcgcgttcccgccgggccacccggacctccccggcgacctgcgggacgcg
ggccagccggtcctcgtccccggcacgatgagcacggcctcgtacgtgctggcaggcgta
ccgggcggggacgccctccactccgcctgccacggcgccggccgtgtcatgagccgccac
caggccgcgcgcacggtcaccggcgccgcgctgcgcgcccggctggaggacgccgggatc
gcagtgcggcccctgtcgatgcgcggcctcgcggaggaggcgccggaggcgtacaaggac
gtgtcggcggtcgtcgccgcgagcgagggcgccggcctgtgccggagggtcgcccgtctg
gaaccgctgggcgtcgtgaagggctag
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