Streptosporangium roseum: Sros_0368
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Entry
Sros_0368 CDS
T01137
Name
(GenBank) ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sro
Streptosporangium roseum
Pathway
sro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sros_0368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sro03019
]
Sros_0368
03009 Ribosome biogenesis [BR:
sro03009
]
Sros_0368
Enzymes [BR:
sro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sros_0368
Messenger RNA biogenesis [BR:
sro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sros_0368
Ribosome biogenesis [BR:
sro03009
]
Prokaryotic type
rRNA helicases
Sros_0368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACZ83399
UniProt:
D2B0Z2
LinkDB
All DBs
Position
complement(357564..359249)
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AA seq
561 aa
AA seq
DB search
MTLNTTDDTSSFADLTLRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGK
TAAFALPVLQRMTRDGGGGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPI
GRQLRALQQGVDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQ
ETPENRQTVLFSATMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAHK
PAALGRVLDVEAPTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLR
TGTADLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPR
EHRMLKTIERVTKRRIPIEKVPTIADLRARRLELTRAALHESLLEDDLERFRVVVETLTD
EFDIMEVALAAVKLAHEASGAADDEQEIPEVALRTEREERGRREPAGRQERRGRPAAGGS
GMTRLFVGAGRSSGIRPQDLVGAIAGESRLTGRDIGAIEIADRFSLVEVPDAAADEVIAV
LRGSTIKGKKATVRRERYNAR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgaacacgaccgacgacacgagcagcttcgccgacctgacgctgcggcccgag
ctcctgcacgccctctccggtctcggctacgaggagcccacgccgatccagcgcgaggcg
atcccccctctgctcgaagggcgcgacctcctcggacaggccgcgacggggacgggcaag
acggccgcgttcgcgctgccggtgctccagcggatgacccgggacggcgggggcggggag
ccgatggcgctcgtgctcgtgcccacgcgcgagctggccgtccaggtctcggaggcgttc
caccactacggccgcgaactgggcgcgcgcgtcctgccgatctacggcgggcagccgatc
ggccggcagttgcgggcgctccagcagggcgtcgacatcgtggtcgcgacgcccggtcgc
gcgctcgaccacatcggccgcgggacgctccgcctggacgacctcgaaatggtcgtcctg
gacgaggcggacgagatgctcgacatgggattcgccgaggacatcgaggcgatcctgcag
gagactcccgagaaccgccagacggtgctcttctcggcgacgatgccgccgcgcatcaac
gggatagcccgccgccatctgaacgacccggtccggatcgagatgggccgtgagacgacg
gccccgggcgaggccccgctggtgcggcagaccgcgtacgtggtcccgcgggcgcacaag
cccgcggcgctcgggcgggtgctggacgtggaggcccccaccgccgcgatcgtcttctgc
cgcacgcgcgacgaggtcgaccagctcaccgagaccctgaacggacgcggttaccgcgcc
gaggcgctgcacggcggcatgggccaggagcagcgcgaccgcgtgatggggcggctgcgg
accgggacggcggatctgctcgtcgcgaccgacgtcgccgcccgggggctcgacatcgag
cagctcacccacgtggtcaactacgacgtcccctccgcgccggagtcctacgtgcaccgg
atcggccgggtcggccgggcgggccgcgagggcgtggccatcaccctggcggagcctcgg
gagcaccggatgctcaagaccatcgagcgggtgaccaaacgccggatcccgatcgagaag
gtgccgacgatcgccgacctgcgcgcccggcggctggagctgacgcgcgccgcgctccac
gaaagcctcctggaggacgacctggagcgcttccgcgtcgtggtcgagacgctcaccgac
gagttcgacatcatggaggtggcgctcgccgcggtgaagctggcgcacgaggccagcggg
gcggcggacgacgagcaggagatccccgaggtcgcgctgaggaccgagcgggaggagcgc
ggccgtcgcgagcccgccggccgccaggagcggcgtggacgcccggcggcgggcgggagc
gggatgacgcgcctgttcgtcggcgccgggcgcagctccgggatccggccgcaggacctg
gtcggcgcgatagccggcgagtcgcgcctcaccgggcgcgatatcggggcgatcgagatc
gccgaccgcttctcgctcgtggaggtcccggacgccgcggccgacgaggtgatcgcggtc
ctgcggggaagcaccatcaaggggaagaaggccacggtccgccgggaacgctacaacgcg
cggtag
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