Streptosporangium roseum: Sros_5947
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Entry
Sros_5947 CDS
T01137
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sro
Streptosporangium roseum
Brite
KEGG Orthology (KO) [BR:
sro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sro03016
]
Sros_5947
Enzymes [BR:
sro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Sros_5947
Transfer RNA biogenesis [BR:
sro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Sros_5947
Prokaryotic type
tRNA splicing ligases
Sros_5947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACZ88682
UniProt:
D2AU27
LinkDB
All DBs
Position
complement(6518284..6519471)
Genome browser
AA seq
395 aa
AA seq
DB search
MTYNEVMGGRAPIRMWADPAEVEPEVMQQLRNVANLPWVQGVAVMPDVHHGMGATVGSVI
AMRDAVSPAAVGVDIGCGMTAVKTSFRAANLPDNLAYLRSKLEQAVPVGFGHHKRPVDPT
RLHGMKTADWAGFWKDFDTLAPAVRPKRERAEVQMGTLGGGNHFLEVCADDEGVVWVVLH
SGSRNIGKELAEFHIGQAQKLPHNQDLPDRNLAVFVGGTPQMDAYRRDLFWAQDYARRNR
AVMMALVCDVLRRHLSGITFEQPISCHHNYVAEERYDDVDVLVTRKGAIRAGSGEFGIIP
GSMATGTYIVKGRGNAGAFNSASHGAGRRMSRSKAKKTFTLADFKAQTDGVECRKDTGVI
DEIPGAYKDIRSVMAAQADLVEVVARLRQLICIKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacaacgaggtgatgggtggccgcgcgccgatccgcatgtgggccgacccggcc
gaggtcgagcccgaggtgatgcagcagctgcgcaacgtcgcgaacctgccgtgggtgcag
ggcgtcgccgtgatgccggacgtgcaccacgggatgggcgcgacggtggggtcggtcatc
gcgatgcgggacgcggtctcgccggcggcggtgggtgtggacatcgggtgcgggatgacc
gcggtgaagacctcgttcagggccgccaacctgcccgacaacctcgcctacctgcgctcg
aagctggagcaggcggtccccgtcgggttcggtcaccacaagaggccggtcgacccgacc
aggctgcacgggatgaagaccgccgactgggcgggcttctggaaggacttcgacaccctg
gccccggccgtgcgcccgaagcgggagcgcgccgaggtgcagatgggcaccctgggcgga
ggcaaccacttcctggaggtctgcgccgacgacgagggcgtggtctgggtcgtgctgcac
tccggatcgcgcaacatcggcaaggagctggccgagttccacatcgggcaggcccagaag
ctgccgcacaaccaggacctgcccgaccggaacctcgcggtgttcgtcgggggcacgccg
cagatggacgcctaccggcgggacctgttctgggcgcaggactacgcgcggcgcaaccgg
gcggtcatgatggccctggtctgcgacgtgctcaggcgtcacctgtcgggcatcaccttc
gaacagccgatctcctgccaccacaactacgtggccgaggagcggtacgacgacgtggat
gtgctcgtcacccgcaagggcgcgatccgcgcgggatccggcgagttcggcatcatcccc
ggctcgatggcgaccggcacctacatcgtgaagggccgggggaacgccggtgcgttcaac
tcggcctcacacggtgccggtcgccggatgagccggagcaaggccaagaagaccttcacg
ctggcggacttcaaggcgcagaccgacggcgtcgagtgccgcaaggacaccggggtgatc
gacgagatccccggcgcctacaaggacatccggtcggtcatggcggcccaggccgacctg
gtcgaggtggtcgcccgcctccggcagctcatctgcatcaagggctga
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integrated database retrieval system
