Streptomyces roseicoloratus: RGF97_02305
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Entry
RGF97_02305 CDS
T09671
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sroc
Streptomyces roseicoloratus
Pathway
sroc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sroc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGF97_02305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sroc03400
]
RGF97_02305
Enzymes [BR:
sroc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RGF97_02305
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RGF97_02305
DNA repair and recombination proteins [BR:
sroc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RGF97_02305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
WMX43926
LinkDB
All DBs
Position
complement(486487..487359)
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AA seq
290 aa
AA seq
DB search
MPELPEVEALRAFLDEHLVGKEIARVLPVAISVLKTYDPPPGALDGARVTGVARHGKFLD
VATEGPAGELHLVTHLARAGWLQWKDVLPSGFPKPGKGPLALRAALTGGDGFDLTEAGTT
KRLAVYVVRDPQEVAGVARLGPDPLAEDFDLAAFTALLSGERRQIKGALRDQSLIAGIGN
AYSDEILHAARMSPFKPTQNLTPEETAALYEAMRTTLGEAVERSHGLAAGRLKAEKKSGL
RVHGRAGEPCPVCGDTVREVSFADSSLQYCPTCQTGGRPLADRRMSRLLK
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtcgaagcccttcgcgccttcctcgacgagcatctcgtgggc
aaggagatcgcccgcgtgctgcccgtcgcgatcagcgtgctcaagacgtacgacccgccg
cccggcgccctcgacggcgcgcgggtgacgggggtcgcccgccacggcaagtttctcgac
gtcgccaccgagggcccggccggcgaactgcacctggtcacccacctcgcccgggccggc
tggctgcagtggaaggacgtgctgccctccggattcccgaagcccggcaagggcccgctc
gccctgcgggccgcgctcaccggaggcgacggcttcgacctcaccgaggcgggcacgacc
aaacggctcgccgtgtacgtggtccgcgacccccaggaggtggcgggcgtggcccgcctg
gggcccgacccgctcgccgaggacttcgacctggccgccttcaccgcactgctctccggc
gaacgccgccagatcaagggcgccctgcgcgaccagagcctgatcgcgggcatcggcaac
gcgtacagcgacgagatcctgcacgccgccaggatgtcgcccttcaaacccacccagaac
ctcacgcccgaggagaccgcggccctgtacgaggcgatgcgcaccaccctcggtgaggcc
gtcgaacgctcccacgggctcgccgcgggccggctcaaggcggagaagaagagcgggctg
cgcgtccacggccgcgccggcgagccctgcccggtctgcggcgacaccgtccgcgaggtg
tccttcgccgactcctccctccagtactgccccacctgccagaccggcggcagaccgctc
gccgaccgccgcatgtcgcgactcctgaaatag
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