Streptomyces roseicoloratus: RGF97_15275
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Entry
RGF97_15275 CDS
T09671
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sroc
Streptomyces roseicoloratus
Brite
KEGG Orthology (KO) [BR:
sroc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sroc03019
]
RGF97_15275 (hrpA)
Enzymes [BR:
sroc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RGF97_15275 (hrpA)
Messenger RNA biogenesis [BR:
sroc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RGF97_15275 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
SLFN-g3_helicase
AAA_16
T2SSE
AAA_25
NACHT
ResIII
nSTAND_NTPase5
PhoH
NTPase_1
TsaE
Motif
Other DBs
NCBI-ProteinID:
WMX45938
UniProt:
A0ABY9RW01
LinkDB
All DBs
Position
3382353..3386345
Genome browser
AA seq
1330 aa
AA seq
DB search
MSTSFAALQSVLAEVSLRDSHRLGRRLEGARRIRKPEARQAVLDEIAAEAGKAKDRVDAR
AARVPAVSYPEQLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGM
IGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNQDETFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSRHFGD
APIVEVSGRTYPVEVRYRPLLEEDSDEADRDQITAICDAVDELRKEGPGDVLVFLSGERE
IRDTADALGKRRLPDTEILPLYARLSHAEQHRVFQAHAGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSEDDFLTRPE
FTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPTQKDP
KKRLTEQGRKLSQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPAEKQAQAD
QLHARFKDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYAQLR
AVAKQMGLHLEEPSADAAAPEQSVHVSLLAGLLSHIGLKDVKESKEGRDQKREGSRNEYL
GARNAKFAIFPGSALFKKPPRMVMSAELVETSRLWARVNARIEPEWIEPLAQHLVKKTYS
EPHWEKDQAAVMAYEKVTLYGVPIVADRKVNYGRVDPEVSRELFIRNALVEGDWRTHHKF
FADNRKLLTEVEELEHRARRRDILVDDETLFDFYDKRVPEHVVSGAHFDSWWKHKRREEP
EFLDFEREMLINEKAGAVTKDDYPDSWRQGALKFRVTYQFEPGADADGVTVHVPLQVLNQ
VTDEGFDWQIPGLREEVVTELIRSLPKPIRRHYVPAPNFAGRFLDSVVPVQEPLTTALAR
ELQRMVGVPVTAEDFDWAKVPEHLKITFRIVDERRRKLAEDKDLETLRLRLRPKARQALS
KAAKAATAGPDGSGPSLERAGLKDWTIGTLVKVFETKRAGQPVKAFPALVDEGDSVAVRL
FDSEAEQAQAMWRGTRKLIMLNIPVNPAKFASDRLTNQQKLALSANPHGSIQALFDDCAT
AAADKLIADHGGPAWDEESFRKLYDKVRADLVELTVRTVGQVQQVLAAWQACERRLKATS
SPALLPNLQDVREQLSWLVPAGFVTRTGLKRLPDLMRYLVAVDRRLQQMPTGVQRDTTRM
EKVHEMLDEYAWLLEQLPKGRPVPSSVTDIRWMVEELRVSYFAHALGTAYPVSDKRIVKA
IDAAVPQPAR
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgccctccagtccgtcctggccgaggtctcgctgcgggactcc
caccggctcggccgccgtctcgaaggcgcccgccgcatccgcaagcccgaagcccgccag
gccgtcctggacgagatcgccgccgaggccggcaaggccaaggaccgggtcgacgcgcgc
gccgcgcgggtgcccgccgtctcgtaccccgaacagctgcccgtctcccagaagaaggac
gagatcgccgaggcgatacgcgaccaccaggtcgtgatcgtcgccggtgagaccggttcc
ggaaagaccacgcagatcccgaagatctgcctggagctcggccggggcgtccggggcatg
atcgggcacacccagccgcgccggatcgccgcccgtacggtcgccgagcgcgtcgccgag
gagctgagaacgccgctcggcgaggcggtcggctggaaggtccggttcaccgaccaggtg
aaccaggacgagaccttcgtcaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcccacgagcggtcc
ctcaacatcgacttcctgctcggctatctggcccagctgctgccgaagcgccccgacctc
aaggtcgtgatcacctccgcgaccatcgatccggagcgcttctcccgtcacttcggcgac
gcgccgatcgtcgaggtcagcggacggacgtatccggtcgaggtgcgctaccggcccctc
ctggaggaggactccgacgaggccgaccgcgaccagatcaccgcgatctgcgacgccgtc
gacgagctccgcaaggaaggaccgggcgacgtcctggtcttcctctccggcgagcgggag
atccgcgacacggcggacgcgctcggcaagaggaggctccccgacaccgagatcctcccc
ctctacgcgcggctctcgcacgccgagcagcaccgggtcttccaggcccacgccggccgc
cggatcgtcctcgcgacgaacgtcgccgagacctccctcaccgtccccggcatcaagtac
gtgatcgatccgggcaccgcccgcatctcgcgctactcgcaccgcaccaaggtgcagcgg
ctgccgatcgagccgatcagccaggccagcgccaaccagcgcaagggccgctgcggccgt
acctcggacggcatctgcatccggctgtactcggaggacgacttcctcacccgccccgag
ttcacggacgcggagatcctccgcaccaacctcgcctccgtcatcctccagatgaccgcg
gcaggtctcggcgacatcgagaagttcccgttcatcgacccgccggaccaccgcaacatc
cgggacggcgtgcagctcctccaggagctgggcgcgctcgacccgacgcagaaggacccg
aagaagcggctgacggagcagggccggaagctgtcccagctgcccgtcgacccgcggctc
gcccgcatggtcctggaggccgacaggaacggctgcgtacgggaggtcatggtcatcgcc
gcggcgctgtccatccaggacccgcgcgagcggccggccgagaagcaggcgcaggccgac
cagctgcacgcccgcttcaaggacgagaccagcgacttcctcgccttcctcaacctctgg
cgctacgtccgcgagcagcagaaggagcgcggatcgtcgtcgttccgccggatgtgcaag
caggagtacctgaacttcctgcgcatccgcgagtggcaggacatctacgcgcagctgcgc
gcggtcgccaagcagatggggctccacctcgaggagccctcggcggacgctgccgccccc
gagcagtccgtgcacgtctccctgctcgccggcctgctttcccacatcggcctcaaggac
gtgaaggagtccaaggagggccgggaccagaagcgggagggcagccggaacgagtacctc
ggcgcccgcaacgccaagttcgcgatcttcccgggctccgcgctcttcaagaagccgccg
cgcatggtgatgtccgccgagctggtggagacctcgcggctgtgggcccgggtgaacgcg
cggatcgagcccgagtggatcgagccgctggcccagcacctggtgaagaagacgtacagc
gagccgcactgggagaaggaccaggcggccgtgatggcgtacgagaaggtgacgctgtac
ggcgtgccgatcgtcgccgaccgcaaggtgaactacggccgggtcgaccccgaggtctcc
cgcgagctgttcatccgcaacgcgctcgtcgagggcgactggcgcacccaccacaagttc
ttcgccgacaaccgcaagctgctcaccgaggtcgaggaactggagcaccgggcccggcgc
cgcgacatcctcgtggacgacgagaccctgttcgacttctacgacaagcgggtgcccgaa
cacgtcgtgtccggcgcccacttcgactcgtggtggaagcacaagcgccgcgaggagccg
gagttcctcgacttcgagcgcgagatgctcatcaacgagaaggcgggtgcggtcaccaag
gacgactatccggactcgtggcggcagggcgcgctgaagttccgggtgacgtaccagttc
gagccgggcgcggacgcggacggcgtcaccgtccacgtgccgctccaggtgctgaaccag
gtgacggacgagggcttcgactggcagatcccgggtctgcgcgaggaggtcgtgacggag
ctgatccgctcgctgcccaagccgatccgccgtcactacgtgcccgcgccgaacttcgcg
ggtcgcttcctggactcggtcgtgccggtgcaggagccgctgaccaccgcgctcgcccgc
gaactccagcggatggtcggtgtcccggtgacggccgaggacttcgactgggcgaaggtg
cccgagcacctcaagatcaccttccggatcgtcgacgagcggcgccgcaagctggccgag
gacaaggacctggagacgctcaggctccggctgcgtcccaaggcccgccaggcgctctcc
aaggcggccaaggcggccacggcgggcccggacggctccgggccttccctggagcgcgcg
gggctgaaggactggacgatcggcacgctcgtgaaggtcttcgagaccaagcgggcgggc
cagccggtcaaggcgttcccggcgctggtggacgagggcgacagcgtcgccgtgcggctc
ttcgactcggaggccgagcaggcgcaggcgatgtggcggggcacccggaagctgatcatg
ctgaacatcccggtgaacccggcgaagttcgcctcggaccggctgaccaaccagcagaag
ctggccctctccgcgaacccgcacggctcgatccaggccctgttcgacgactgcgcgacc
gccgccgccgacaagctgatcgccgaccacggcggccccgcctgggacgaggagtcgttc
cggaagctgtacgacaaggtgcgcgccgacctggtcgagctgaccgtacggacggtgggc
caggtgcagcaggtgctggcggcctggcaggcctgcgagcggcggctgaaggcgacgagc
agcccggcgctgctgccgaacctccaggacgtgcgggagcagctgtcctggctggtgccg
gccggcttcgtcacgcgtaccggcctgaagcggctgccggacctgatgcgctacctggtg
gcggtggaccggcggctgcagcagatgccgacgggcgtgcagcgggacaccacccgcatg
gagaaggtgcacgagatgctggacgagtacgcgtggctgctcgaacagctcccgaagggc
cgtccggtgccgtcctcggtcacggacatccgctggatggtggaggagctgcgcgtcagc
tacttcgcgcacgcgctgggcacggcgtacccggtctcggacaagcggatcgtgaaggcg
atcgacgcggccgtgccccagccggcccggtag
DBGET
integrated database retrieval system
