Streptomyces roseicoloratus: RGF97_22945
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Entry
RGF97_22945 CDS
T09671
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sroc
Streptomyces roseicoloratus
Pathway
sroc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sroc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGF97_22945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sroc03019
]
RGF97_22945
03009 Ribosome biogenesis [BR:
sroc03009
]
RGF97_22945
Enzymes [BR:
sroc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RGF97_22945
Messenger RNA biogenesis [BR:
sroc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGF97_22945
Ribosome biogenesis [BR:
sroc03009
]
Prokaryotic type
rRNA processing factors
RGF97_22945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WMX47103
LinkDB
All DBs
Position
5081272..5085210
Genome browser
AA seq
1312 aa
AA seq
DB search
MLEQPEENENTAPGDKLPPRRRRRAASRLAGPPVTAGGTDAAETAAPAAEAPAPAAEAAA
PAAAEEAPARPRRRATRKASAPAAPEPVKAEAETVADAPAEAAAPAAEAAPVEEAAPARR
TRRRATRAVTSPEPVETAAETEPAAEAPAEAVAPAAEAAPVEEAAPARRTRRRATRAVTS
PEPVETETAAETVAETPAEEPAAGAPAAETAAPVAAEAAPAPRRRATRRTGTPEVTPDVA
AELSAETSGEELPADTVEEIASHAVEVAAAEQAATRGRSRRRATSPQFAAPSETEEAPRS
RRATRPAVAVFQAPVFTEPMFQTPETAAAMAAAEVVEEEPEEETAETPEAVETVEAVEAE
ESPRSRRRRRRRGEPVAVEPVPATVADEPEVESTPEAEAEAEAEEGDEYEDRPSRRRRRG
GRRRRRGELTEVEETEEEGEETDAEETDSDAEEEPEEGEEPEAGGSSSSRRRRRRRRRSG
DAAGEAETTDEDGVRTVVKVREPRPAREKAEPSDEVQSIKGSTRLEAKKQRRREGREQGR
RRVPIITEAEFLARREAVERVMVVRQNGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYL
GKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTK
DPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIV
RTAAEGASEDELRRDVERLQAQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSK
VIVSGDEAWETIHGYVGHVAPDLTDRLSKWTSEVDVFATYRIDEQLMKALDRKVWLPSGG
SLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFI
DMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCN
GRGVIVHMEQPSSHGGGGGGKRSKKRGRGGDAHEHGHEHAHEAVATPAETHEAPAEQVET
PAEVAAELAAPVAVPELIGADEELYGSIAEAEAAAARGRGRRRATRRVSAPVASPAVTET
ETYEVVVPEPKGRKARAEQQPKAEEKAKAEAPVAETPAAEAPVAEPAAEETPAPRTRRRA
TRKATAPVTATAEPAAEPVAETAVETVAVEEPPAVAEAPVVEPAVVEEPAVVEEAPVAAP
PRARRRVVRKATAPAGAPAGAEEAAVVVVASAAPAAETADSGTTEPGAGSAPSAEEAAEA
AAPAKKAARKTAAKKATAKKAATKKTAAKKTAAKKTTAKKAAAKKTAAPAQD
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacagcccgaagagaacgagaacaccgcacccggtgacaagctgccgccgcgc
cgtcggcggcgcgccgcttcccggctggccggcccgccggtgacggccggaggcaccgac
gccgccgagaccgccgccccggccgccgaggcccccgcgccggccgccgaggccgccgcc
cccgccgctgccgaggaggcgcccgcgcgtccgcgccgccgcgccacccgcaaggccagc
gcgcccgccgcccccgagccggtcaaggccgaggccgagaccgtggcggacgccccggcc
gaggctgcggcgcccgccgctgaggccgcgcccgtcgaggaggccgctccggcccgccgt
acccgtcgccgcgcgacccgcgccgtgacgtccccggagccggtcgagaccgctgccgag
accgagcccgctgccgaggccccggccgaggccgtggcgcccgccgctgaggccgcgccc
gtcgaggaggccgctccggcccgccgtacccgtcgccgcgcgacccgcgccgtgacgtcc
ccggagccggtcgagaccgagaccgctgccgagaccgtggccgagaccccggccgaggag
cccgccgccggggccccggccgccgagaccgccgctccggtcgccgcggaggccgccccc
gcgccccgccgccgtgccacccgcaggaccgggacgcccgaggtgaccccggacgtggcc
gccgagctctccgccgagacctccggtgaggagctgcccgccgacaccgtcgaggagatc
gcctcgcacgccgtcgaggtcgccgccgccgagcaggccgccacccgtggccgctcccgc
cgccgcgccacctcgccgcagttcgccgcgccgtccgagaccgaggaggcgccgcgctcc
cgccgcgccacccgtccggccgtcgccgtcttccaggccccggtcttcaccgagcccatg
ttccagactccggagaccgccgcggccatggccgccgccgaggtcgtcgaggaggagccg
gaggaggagaccgccgagactcccgaggccgtcgagacggtcgaggccgtcgaggccgag
gagtcgccgcgctcccgccgccgtcgccgccgccgtggcgagccggtcgccgtcgagccc
gtcccggccaccgtcgccgacgagcccgaggtcgagtccacccccgaggcggaggccgag
gccgaggccgaggagggcgacgagtacgaggaccgtccgtcccgtcgccgtcgccgtggc
ggccgtcgccgtcgccgcggcgagctcaccgaggtcgaggagaccgaggaggagggcgag
gagaccgacgccgaggagaccgactccgacgccgaggaggagccggaggagggcgaggag
cccgaggccggcggctccagcagctcccgccgtcgccgccgtcgccgccggcgcagcggc
gacgccgccggcgaggccgagacgaccgacgaggacggcgtccgcacggtcgtcaaggtc
cgcgagccgcgcccggcccgcgagaaggccgagccgtccgacgaggtgcagtccatcaag
ggctccacccgcctggaggccaagaagcagcgccgccgcgagggccgcgagcagggccgc
cgccgcgtcccgatcatcacggaggccgagttcctcgcccgccgcgaggccgtcgagcgc
gtcatggtcgtccgccagaacggcgagcgcacccagatcggcgtcctcgaggacaacgtg
ctcgtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggcaacgtctacctg
ggcaaggtccagaacgtgctgccgtccatggaggccgccttcgtcgacatcggcaagggc
cgcaacgccgtcctgtacgccggcgaggtgaacttcgaggcgctcggcatggccaacggg
ccgcgccgcatcgagtccgccctcaagtccggccagtcggtcctcgtgcaggtcacgaag
gacccgatcggccacaagggcgcccgtctgaccagccaggtctccctcccgggccgctac
ctcgtgtacgtgcccgagggctccatgaccggcatcagccgcaagctcccggacaccgag
cgcgcccgtctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtg
cgcaccgccgccgagggcgcgagcgaggacgagctgcgccgtgacgtcgagcggctgcag
gcgcagtgggaggacatccagaagaaggcgaagagcggcaacgcgccgaccctgctgtac
ggcgagccggacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctccaag
gtcatcgtcagcggtgacgaggcgtgggagaccatccacggctacgtcggccacgtcgcc
ccggacctcaccgaccgcctgtccaagtggaccagcgaggtcgacgtcttcgcgacgtac
cggatcgacgagcagctgatgaaggcgctcgaccgcaaggtctggctgccgtccggcggc
tcgctggtgatcgacaagaccgaggcgatggtcgtcgtcgacgtcaacaccggcaagttc
acgggccagggcggcaacctcgaggagaccgtcacccggaacaacctggaggcggccgag
gagatcgtccgccagctgcgcctgcgcgacctcggcggcatcgtcgtcatcgacttcatc
gacatggtcctggagtccaaccgcgacctggtgctgcgccgtctcctggagtgcctgggc
cgcgaccggaccaagcaccaggtggccgaggtcacctcgctgggcctggtccagatgacc
cgcaagcgggtcggccagggcctcctggagtccttctcggagacctgcgtccactgcaac
ggccgcggtgtcatcgtccacatggagcagccgtcctcgcacggcggcggtggcggcggc
aagcgctcgaagaagcgcggccgcggcggcgacgcccacgagcacggtcacgagcacgcc
cacgaggccgtcgcgaccccggccgagacccacgaggcgccggccgagcaggtcgagacg
ccggccgaggtcgcggcggagctcgcggccccggtggccgtgcccgagctgatcggcgcg
gacgaggagctgtacggcagcatcgccgaggccgaggcggccgccgcccgcggccgtggc
cgtcgccgggcgacccgccgggtgtcggctcccgtcgcctcgccggcggtgaccgagacg
gagacctacgaggtcgtcgtaccggagccgaagggcaggaaggccagggccgagcagcag
ccgaaggcggaggagaaggcgaaggccgaggccccggtcgccgagaccccggccgccgag
gcccccgtggccgagccggccgcggaggagacgcccgcgccgcgtacccgccgccgtgcc
acccgcaaggccacggcgccggtgaccgccaccgcggagccggccgccgagccggtcgcc
gagacggcggtcgagacggtcgccgtcgaggagcccccggccgtcgccgaggcccccgtc
gtggagccggccgtcgtcgaggagccggccgtcgtcgaggaggcccccgtggccgccccg
ccgcgggcgcgccgccgggtggtccgcaaggcgaccgccccggcgggtgcgccggccggt
gccgaggaggccgccgtggtcgtggtggcgtccgccgccccggccgccgagacggcggac
tccgggaccacggagcccggcgcggggtccgccccgtccgcggaggaggccgccgaggcc
gccgctccggccaagaaggcggcccgcaagaccgccgccaagaaggccaccgccaagaag
gccgccaccaagaagacggcggccaagaagacggcggcgaagaagacgaccgccaagaag
gcggccgccaagaagaccgccgcccccgcgcaggactga
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