Streptomyces roseicoloratus: RGF97_25700
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Entry
RGF97_25700 CDS
T09671
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sroc
Streptomyces roseicoloratus
Pathway
sroc03030
DNA replication
sroc03430
Mismatch repair
sroc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sroc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGF97_25700 (dnaE)
03430 Mismatch repair
RGF97_25700 (dnaE)
03440 Homologous recombination
RGF97_25700 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sroc03032
]
RGF97_25700 (dnaE)
03400 DNA repair and recombination proteins [BR:
sroc03400
]
RGF97_25700 (dnaE)
Enzymes [BR:
sroc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGF97_25700 (dnaE)
DNA replication proteins [BR:
sroc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RGF97_25700 (dnaE)
DNA repair and recombination proteins [BR:
sroc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RGF97_25700 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
WMX47532
LinkDB
All DBs
Position
5678758..5682297
Genome browser
AA seq
1179 aa
AA seq
DB search
MTKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKKDDVSGSGGYTHKTIWAANSTGLHNLFRL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEALKSASEYQD
IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALLCI
QTGKNLSDPDRFKFDGTGYYLKSTDEMYAVDSSDAWQEGCRNTLLVAEQIDTTGMFEKRD
LMPKFDIPEGYTEVSWFREETMRGMHRRFPDGIPEDRMRQVEYEMDTIISMGFPGYFLVV
ADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLDGITNPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKA
NKGVELDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLDVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFTIFQASAQKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNES
ESNFAAQGDDVILFGLTAVRNVGANVVESIIRTRKSKGKYSSFPDFLDKVEAVVCNKRTI
ESLIKAGAFDTMGHTRKGLVAQHEPMIDTVVAVKRKEAEGQFDLFGGMGDEGTDEPGFGL
DVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGISQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELMVPDLSNAGTNAPVILTIPTVKVTPPMISRLGEILQHHKGNTEVRI
KLQGPRSTTVLRLDRHRVQPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagccgcccttcacgcacctccacgtccacacccagtactccctgctggacggt
gccgcgcggctcaaggacatgttcaacgcgtgcaacgagatgggcatgacccacatcgcc
atgtccgaccacgggaacctccacggcgcgtacgacttcttccacaccgcccagaaggcc
ggcgtgacgccgatcatcggcatcgaggcctacgtcgccccggagtcccgccgcaacaag
cggaagatccagtggggccagccgcaccagaagaaggacgacgtctccggctccggtggt
tacacccacaagaccatctgggcggcgaacagcaccggactgcacaacctcttccggctg
tcctccgacgcgtacgccgagggctggctgcagaagtggccccggatggacaaggagacc
atctcgcagtggtcggagggcctgatcgcctccaccggctgcccctccggcgaactgcag
acccggctgcgcctcggtcagttcgacgaggccctgaagtccgcctccgagtaccaggac
atcttcggcaaggaccggtacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacggcctgctggagatcggcaagaagctcggcatcccgccgctggtcacc
aacgactcgcactacacgtacgcgcacgaggccgccgcccacgacgccctgctgtgcatc
cagaccggcaagaacctctcggacccggaccgcttcaagttcgacggcaccggctactac
ctgaagtccacggacgagatgtacgccgtcgactcctcggacgcctggcaggagggctgc
cgcaacaccctgctcgtcgccgagcagatcgacaccaccggcatgttcgagaagcgcgac
ctcatgccgaagttcgacatccccgagggctacaccgaggtctcctggttccgcgaggag
accatgcggggcatgcaccggcgcttcccggacggcatccccgaggaccgcatgcggcag
gtcgagtacgagatggacaccatcatctcgatgggcttcccgggctacttcctcgtcgtc
gccgacttcatcatgtgggcgaagaagcagggcatcgccgtcggccccggccgaggctcc
gcggccggctcgatcgtcgcgtacgccatgggcatcaccgacctcgacccgatcccgcac
ggcctgatcttcgagcgcttcctcaaccccgagcgcatctcgatgcccgatgtcgacatc
gacttcgacgagcgcaggcgcgtcgaggtgatccggtacgtgaccgagaagtacggcgcc
gacaaggtcgccatgatcggcacgtacggcaagatcaaggccaagaacgcgatcaaggac
tccgcccgcgtcctcggctacccgtacgcgatgggcgaccggctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcgacctcgacggcatcaccaacccctcccacccgcgc
tacagcgaggcgggcgagatccgggcgatgtacgagaacgagccggacgtgaagaaggtg
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggcgtgcacgcggccggc
gtgatcatgtccagcgagccgatcgtcgaccacgccccgatctgggtgcggcacaccgac
ggcgtcaccatcacgcagtgggactacccgcagtgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctcaccatcatggacgacgccgtcaagatggtgaaggcc
aacaagggcgtcgagctcgacctgctcgccctgccgctggacgacccgaagaccttcgaa
ctgctccagcgcggtgacaccctcggcgtcttccagttcgacggcggacccatgcggtcc
ctgctgcggctgatgaagcccgacaacttcgaagacatctccgccgtgtccgcgctctac
cgcccgggcccgatgggcatgaactcgcacacgaactacgccctgcgcaagaacggccag
caggagatcactccgatccacccggagctggaggagcccctcaaggaggtcctcgacgtc
acctacggcctgatcgtctaccaggagcaggtccagaaggccgcccagatcatcgccggc
tactcgctcggcgaggccgacatcctccgccgcgtcatgggcaagaagaagcccgacgag
ctggcgaagaacttcaccatcttccaggccagcgcccagaagaacggctacagcgacgag
gccatccaggccctctgggacgtcctggtcccgttcgccggctacgccttcaacaaggcg
cactccgccgcgtacggcctggtctcctactggaccgcctacctcaaggcgaactacccc
gccgagtacatggcgggactgctcacctcggtcaaggacgacaaggacaagtccgccgtc
tacctgaacgagtgccgccgcatgggcatcaaggtgctcccgccgaacgtcaacgagtcc
gagtcgaacttcgccgcccagggcgacgacgtgatcctcttcggcctcaccgccgtccgc
aacgtcggcgccaacgtcgtcgagtcgatcatcaggacccgcaagagcaaggggaagtac
agctccttcccggacttcctggacaaggtcgaggccgtcgtctgcaacaagcggaccatc
gagtcgctgatcaaggccggcgccttcgacaccatgggccacacccgcaagggtctggtc
gcccagcacgaacccatgatcgacaccgtggtggcggtcaagcgcaaggaggccgaggga
cagttcgacctgttcggcggcatgggcgacgagggcaccgacgagccgggcttcggcctc
gacgtcgagttctccgacgtcgagtgggagaagtcctacctgctggcccaggagcgcgag
atgctcggcctctacgtctccgaccacccgctcttcggcctcgagcacgtcctgtccgac
aagaccgacgccggcatctcccagctcaccggcggcgaacacgcggacggcgcggtcgtc
accatcggcggcatcatctccggcctccagcggaagatgaccaagcagggcaacgcctgg
gccatcgccaccgtcgaggacctggccggctccatcgagtgcatgttcttcccggccacc
taccagctggtctccacccagctggtcgaggacgcggtcgtcttcgtcaagggccggctc
gacaagcgcgaggacgtcccccgcctggtcgccatggagctgatggtccccgacctgtcg
aacgcgggcaccaacgcgccggtcatcctcaccatcccgacggtcaaggtcaccccgccg
atgatcagccggctgggcgagatcctccagcaccacaagggcaacaccgaggtgaggatc
aagctccaggggccccgctcgaccaccgtgctccggctcgaccggcaccgggtccagccc
gacccggcgctcttcggcgacctcaaggtgctgctcggcccgtcctgcctggccggctga
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integrated database retrieval system
