Skermanella rosea: JL101_000020
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Entry
JL101_000020 CDS
T07666
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
sroe
Skermanella rosea
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sroe03032
]
JL101_000020 (gyrB)
03400 DNA repair and recombination proteins [BR:
sroe03400
]
JL101_000020 (gyrB)
Enzymes [BR:
sroe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
JL101_000020 (gyrB)
DNA replication proteins [BR:
sroe03032
]
Prokaryotic type
DNA Topoisomerases
JL101_000020 (gyrB)
DNA repair and recombination proteins [BR:
sroe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JL101_000020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UEM03871
LinkDB
All DBs
Position
4092..6578
Genome browser
AA seq
828 aa
AA seq
DB search
MAQEAFKTPDSAPQEYGAHSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAID
ESLAGYCDKVEVVLNADGSVTVRDNGRGIPVDMHEEEGVSAAEVIMTQLHAGGKFDQNSY
KVSGGLHGVGVSVVNALSELLTLRIWRAGRIWEMDFRHGDRVEPLKDAGEAPLVGGKPLT
GTEVTFLPSKATFTKTDFDFGTLEHRLRELAFLNSGVYLQLTDARGVEPKVVDLHYEGGL
EAFVQYLDRSKAALHKPAIALSAVRPSELGGEITVEAALQWNDSYHETMLCFTNNIPQRD
GGTHLAGFRAALTRTLNNYATESGIAKKEKVNLTGDDMREGLTCVLSVKVPDPKFSSQTK
DKLVSSEVRPVVESAISEALATWFEEHPNEAKRITAKVVEAAAAREAARKARELTRRKGA
LDITSLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQYQAILPLRGKILNVERAR
FDKMLGSAEIGTLIAALGTGIGREEFDVAKTRYHKIIIMTDADVDGSHIRTLLLTFFYRQ
MPQVIEQGYLYIAQPPLYRIKRGNSRERYLKDDKALEDYLTDEGIDDVIFSPSSDGVMVV
GERLKALVEQARAARGPMETLTRKAGSLRVVEQAAIAGAYDLAILNDPERAAALAAEIAT
RLNTLSDSDGMTGGGWQGSASQDALVISRTRRGVTHRHVLDRDLLKSVEARTLNTMAASL
KANYAGIGRLTHKDKELRPITGPLALLDAIMELGRHGVTIQRYKGLGEMNPEQLWETTLD
PTKRSLLQVKVNHADEAEEVFSTLMGDIVEPRREFIQDNALKVANLDV
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggaagctttcaagacacccgactccgcaccgcaggaatacggcgcccactcc
atcaaggtgttgaaggggttggacgcggtgcggaagcgccctggcatgtatatcggcgac
accgatgacggctcgggcctccaccacatggtctacgaggtggtggacaacgccatcgac
gagtcgctggcgggatattgcgacaaggtcgaggtggtgctcaacgccgacggatcggtc
acggtccgcgacaacggccgcggcatccccgtggacatgcacgaggaggagggcgtctcg
gcggcggaggtcatcatgacccagctccatgccggcggaaagttcgaccagaactcctac
aaggtctccggcggcctgcacggagtcggcgtgtcggtggtcaacgccctgtccgagctg
ctgacgctgcgcatctggcgcgccggccggatctgggagatggacttccgccacggcgac
cgggtcgagccgctgaaggacgcgggcgaggcgccgctcgtcggcggcaagccgctgacc
ggcaccgaggtgaccttcctgccctccaaggccaccttcaccaagaccgacttcgacttc
ggcacgctggagcaccggctgcgcgagctggccttcctcaattccggcgtctatctccag
ctcaccgacgcccgcggggtcgagcccaaggtggtcgacctgcattacgagggcgggctg
gaagccttcgtccagtacctggaccggtccaaggcggcgctgcacaagccggcgatcgcc
ctgtccgccgtccgccccagcgagctgggcggcgagatcacggtcgaggcggcgctccag
tggaacgacagctatcacgagacgatgctgtgcttcaccaacaacatcccgcagcgtgac
ggcggcacccacctggccggcttccgggcggcgctgacccgcacgctgaacaactacgcc
acggagtccggcatcgccaagaaggagaaggtcaacctgaccggcgacgacatgcgcgag
ggcctgacctgcgtgctgtcggtcaaggtgcccgatccgaagttctccagccagaccaag
gacaagctggtctcttccgaggtccggcccgtggtcgagtcggccatatcggaggcgctc
gccacctggttcgaggagcacccgaacgaggccaagcgcatcaccgccaaggtggtggag
gccgccgccgcccgcgaggccgcccgcaaggcgcgcgagctgacccggcgcaagggcgcc
ctggacatcacctcgctgccgggcaagctggccgactgccaggagcgcgacccggcgctg
tccgagctgttcatcgtcgagggcgactcggcgggcggctcggccaagcagggccgctcg
cgccagtaccaggcgatcctgccgctccgcggcaagatcctgaacgtggagcgggcgcgc
ttcgacaagatgctcggctcggcggagatcggcacgctgatcgcggcgctgggcaccggc
atcggccgggaggagttcgacgtcgccaagacgcgctaccacaagatcatcatcatgacc
gacgccgatgtggacggctcccacatccgcacgctgctgctgaccttcttctaccgccag
atgccgcaggtgatcgagcagggctacctgtacatcgcccagccgccgctctaccggatc
aagcgcggcaactcgcgcgagcggtacctgaaggacgacaaggcgctggaggattacctg
accgacgagggcatcgacgacgtgatcttcagcccgtcgtccgacggcgtgatggtcgtc
ggcgagcgcctgaaggccctggtggagcaggcccgcgccgcgcgcggcccgatggagacc
ctgacccgcaaggccggcagcctgcgcgtggtcgagcaggccgccatcgccggcgcctac
gacctggcgatcctcaacgaccccgagcgcgccgcggccttggcggcggagatcgcgacg
cgcctcaacaccttgtccgacagcgacggcatgaccggcggcggctggcagggcagcgcc
agccaggacgccctggtgatctcccgcacccggcgcggcgtgacccaccgccacgtcctg
gaccgcgacctgctgaagagcgtcgaggcccgcaccctcaacaccatggccgcctcgctc
aaggccaactacgccggcatcggccgcctgacccacaaggacaaggaactccgcccgatc
accggccccctggccctgctcgacgcgatcatggaactcggccgccacggcgtgaccatc
cagcgctacaagggcctgggcgagatgaaccccgagcagctctgggaaaccaccctggac
ccgaccaagcgctccctgctccaggtgaaggtcaaccacgccgacgaggccgaggaggtc
ttcagcaccctgatgggcgacatcgtggagcccaggcgcgagttcatccaggacaacgcg
ctgaaggtggcgaacctggacgtttga
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