Skermanella rosea: JL101_005090
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Entry
JL101_005090 CDS
T07666
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sroe
Skermanella rosea
Pathway
sroe02020
Two-component system
sroe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JL101_005090 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JL101_005090 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sroe03021
]
JL101_005090 (rpoN)
Transcription machinery [BR:
sroe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JL101_005090 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
MID_pPIWI_RE
LacI
Motif
Other DBs
NCBI-ProteinID:
UEM04812
LinkDB
All DBs
Position
1087941..1089524
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AA seq
527 aa
AA seq
DB search
MALTQRLDLRQTQSLVMTPQLQQAIKLLQLSNMELSDYVDREIEQNPLLERDEAEFGGGQ
ANGDGTGAQGGAGEGAREGGIDQAEPAPAVNGADQRQLDTHELTTSDHMAGGSDAPLDTD
FENVWTNGSAADGGFDGTEAFGDWSSKGGSGSFEDGDYNLEQTLSGETSLRDHLIGQLNV
DIADPVDRLIGLALIDMLDAAGYVTGDLDALAEQLNCELSRIEAVLRRVQRFDPPGVFAR
SLKECLEIQLRERNHLDPAMQAMLNNLELLAARNVPALLKVCGVDAEDLSDMVAEIRTLD
PKPALRFDHQVVQTVTPDILMRLQPGGGWLIELNTETLPRVLINQRYFAQVSGEVRNKAE
KEYISERFNSANWLVKSLHQRANTILKVATEIVRQQDLFFVKGVQYLRPLILRDIAEAIG
MHESTVSRVTTNKFMATPRGVFELKYFFTSSISGADGEAAHSAEAVRFRIKALIDGEPPE
GILSDDRIVEILKSDGIDIARRTVAKYREAMRIPSSVQRRREKSMRL
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttacacaacgtctcgatctcagacagacccagtcactcgtcatgaccccgcag
ctgcagcaggcgatcaagctgctgcagctctccaacatggagctgtcggattatgtcgac
cgggagatcgagcagaaccccctgctggagcgcgacgaggcggagttcggcggcggccag
gccaacggcgacggcaccggggcgcagggcggggcgggcgagggggcccgcgaaggcggc
atcgaccaggcggagccggcgccggccgtcaacggcgccgaccagaggcagctcgacacc
cacgaattgaccacgtcggaccacatggccggcgggtcggacgcgccgcttgacaccgat
ttcgagaatgtctggaccaacggaagcgccgccgacggcggcttcgacgggaccgaggct
ttcggcgactggtcgtcgaagggcggcagcggcagcttcgaggacggcgactacaatctc
gagcagacgctgagcggcgagaccagcctgcgcgaccacctgatcggccagctcaacgtc
gatatcgccgatccggtggaccggctgatcgggctggccctgatcgacatgctcgatgcc
gccggctacgtgacgggcgacctggacgccctggccgagcagctgaactgcgaactctcc
cggatcgaggcggtcctgcggcgggtgcagcgcttcgacccgcccggcgtcttcgcccgc
agcctgaaggagtgcctggaaatccagctgcgcgagcgcaatcacctcgatccggcgatg
caggcgatgctgaacaacctggagctgctggcggcccgcaacgtcccggcactgctcaag
gtctgcggcgtcgatgccgaggatctgtccgacatggtggcggagatcaggacgctggat
cccaagccggccctgcgtttcgaccaccaggtggtgcagacggtcacgcctgacatcctg
atgcggctgcagccgggcggcggctggctgatcgagttgaacacggagactttgccgcgg
gtgctgatcaaccagcgctacttcgcccaggtcagcggcgaagtccgcaacaaggccgag
aaggagtatatttccgagcggttcaattccgccaactggctggtgaagtccctgcaccag
cgggccaacacgatcctgaaggtcgcgactgagatcgtccgccagcaggacctgttcttc
gtcaagggcgtgcagtatctgcgccccttgatcctgcgcgacatcgcggaggcgatcggc
atgcacgagtcgaccgtcagccgggtcacgaccaacaagttcatggcgactccgcgcggc
gtgttcgagttgaagtacttcttcacgtcctcgatcagcggggccgacggggaggccgcc
cactcggccgaggcggtgcgattccggatcaaggccctcatcgacggcgagcctccggaa
ggcatcctttccgacgaccggatcgtcgagattctcaaatcggatgggatcgacattgcg
cgtcgcacggtggcaaagtatcgtgaggccatgcggatcccgtcatcggtccagcgccgc
cgcgaaaagtccatgagactgtga
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