Skermanella rosea: JL101_006035
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Entry
JL101_006035 CDS
T07666
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sroe
Skermanella rosea
Pathway
sroe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JL101_006035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sroe03021
]
JL101_006035
03400 DNA repair and recombination proteins [BR:
sroe03400
]
JL101_006035
Enzymes [BR:
sroe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JL101_006035
Transcription machinery [BR:
sroe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JL101_006035
DNA repair and recombination proteins [BR:
sroe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JL101_006035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
UEM04996
LinkDB
All DBs
Position
1288652..1289668
Genome browser
AA seq
338 aa
AA seq
DB search
MIQKNWQELIKPNKLDIQPGDDPQRVATVVAEPLERGFGLTLGNALRRVLLSSLQGAAVT
SIQIEGVLHEFSSIPGVREDVTDIVLNIKTMGLRLHGDGPKRMRLRADGPGEVTAGMIET
GPDIEVMDPDLVICTLDNGARLVMELTVESGKGYVPASQNRPEDAPIGLIPVDALFAPIR
KVSYKVDNTRVGQVTDYDRLSMQVETNGAVSPEDAVALAARILQDQLQLFINFEEPTHAV
AEERGEEPPFNKNLLRKVDELELSVRSANCLKNDNIVYIGDLVQKTEAEMLRTPNFGRKS
LNEIKEVLSQMGLHLGMEIPNWPPENIEELAKRLEEPY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgatccagaagaattggcaggagctgatcaagccgaacaagctcgacatccagccgggc
gacgatccgcagcgggtcgcgaccgtggtcgccgagccgctcgagcggggcttcggtctc
acgctcggcaacgcgctccgtcgcgtcctgctgtcctccctccagggtgccgccgtcacc
tcgatccagatcgagggcgtgctgcatgaattctcgtcgatccccggcgtgcgcgaagat
gtgacggacatcgtcctgaacatcaagaccatgggcctgcgcctgcacggcgacggaccc
aagcggatgcgcctgcgcgccgacggccccggcgaagtgaccgccggcatgatcgagacc
ggtcccgacatagaggtgatggatcccgacctggtgatctgcaccctcgacaacggcgcc
cggctggtgatggagctgacggtcgagagcggcaagggctatgtcccggccagccagaac
cgtccggaagacgcgccgatcggcctgatcccggtggacgcgctgttcgcgccgatccgc
aaggtatcgtacaaggtcgacaacacccgcgtcggccaggtcaccgactacgaccgcctg
tcgatgcaggtcgagaccaacggcgcggtgtccccggaagacgcggtggctctcgccgcc
cgcatcctccaggaccagctccagctcttcatcaacttcgaggagccgacccacgcggtc
gccgaggagcgcggcgaggagccgccgttcaacaagaacctgctgcgcaaggtggacgag
ctggaactgtcggtccgttcggccaactgcctgaagaacgacaacatcgtctatatcggc
gacctggtgcagaagacggaggcggaaatgctccgcacgccgaacttcggccgcaagtcg
ctgaacgagatcaaggaagtcctgtcccagatgggtctgcacctgggcatggaaatcccg
aactggccgcccgagaacatcgaagagctggccaagcgtctcgaagagccgtactaa
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