Skermanella rosea: JL101_009665
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Entry
JL101_009665 CDS
T07666
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sroe
Skermanella rosea
Pathway
sroe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL101_009665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sroe03019
]
JL101_009665
Enzymes [BR:
sroe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JL101_009665
Messenger RNA biogenesis [BR:
sroe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JL101_009665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
CMS1
ANIS5_cation-bd
DUF5612
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEM05680
LinkDB
All DBs
Position
2107343..2108686
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AA seq
447 aa
AA seq
DB search
MTSFSELGLSEPILRAISAENYSTPTPIQAQAVPHLIQGRDLLGVAQTGTGKTAAFALPI
LHRLSENRTRPQPQGARALVLTPTRELAIQIGESFATYGRNLPLTRTVIFGGVGQNPQVQ
NMARGVDILVATPGRLLDLIGQGFIKLDRLEVFVLDEADRMLDMGFIHDVRRVIKVLPAK
RHTLFFSATMPPEIAKLADKILTDPVRVEVTPVSSTAERIEQHVMFVEKADKRPLLGEVL
KRPDIGRALVFTRTKHGANRVVEQLGQIAVRAEAIHGNKSQTARQRALENFRTGEIRVLV
ATDIAARGIDIDGITHVINYDLPNVPESYVHRIGRTARAGTSGIAISFCDSEERAYLKDI
EKLIKVRIPVVEDHPWHSLGGVVQADPDARPPLQDRRPQRNGRPSQGRQDQPRQGRQDQP
RQGQGRPGQPQQGRPPQGNPSRRRSGR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtctttcagcgaactcggcttgagcgagccgatcctgcgcgccatcagcgccgaa
aactacagcacccccactccgatccaggcgcaggccgtgccgcacctgatccagggtcgc
gacctgctgggcgtcgcccagaccggcaccggcaagaccgcggccttcgcgctgccgatc
ctccaccgcctgtcggaaaaccgcacccggccccagccgcagggcgcccgcgccttggtg
ctgacgccgacccgcgagctcgccatccagatcggcgagagcttcgctacctacggccgc
aacctgccgctcacccgcaccgtcatcttcggcggcgtcggccagaacccgcaggtccag
aacatggcgcgcggcgtcgacatcctggtcgccacgccgggccgcctgctcgacctgatc
gggcagggcttcatcaagctcgaccggctcgaggtgttcgtgctggacgaggccgaccgc
atgctcgacatgggcttcatccatgatgtccggcgggtgatcaaggtcctgccggccaag
cgccatacgcttttcttctccgcgaccatgccgccggagatcgcgaagctggccgacaag
atcctgaccgacccggtccgggtcgaggtgacgccggtttccagcaccgcggagcggatc
gagcagcacgtcatgttcgtcgagaaggcggacaagcggccccttttgggcgaagtgctc
aagcgtcccgacatcgggcgcgccctggtgttcacccggaccaagcacggcgccaaccgg
gtcgtcgagcagctcggccagatcgcggtccgggccgaggcgatccacggcaacaagtcg
cagaccgcgcgccagcgggcgctggagaatttccgcaccggcgagatccgggtgctggtc
gccaccgacatcgcggcccgcggcatcgatatcgacggcatcacccacgtgatcaactac
gacctgccgaacgtcccggagagctacgtccaccgcatcggccggacggcgcgggcgggg
accagcggcatcgccatctcgttctgcgatagcgaggagcgggcctacctcaaggatatc
gagaagctgatcaaggtccgcatcccggtggtcgaggaccatccctggcattccctcggc
ggcgtggtgcaggccgatcccgacgcgcggcccccgctccaggaccgccggccgcagcgc
aacggcaggccttcccagggccggcaggaccagccgcgccagggccggcaggaccagccg
cgccaggggcagggccgtccgggccagccccagcagggcaggccgccccagggcaacccg
tcccgccgccgctccgggcgctga
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