Skermanella rosea: JL101_009865
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Entry
JL101_009865 CDS
T07666
Name
(GenBank) PAS domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sroe
Skermanella rosea
Pathway
sroe03030
DNA replication
sroe03430
Mismatch repair
sroe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL101_009865
03430 Mismatch repair
JL101_009865
03440 Homologous recombination
JL101_009865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sroe03032
]
JL101_009865
03400 DNA repair and recombination proteins [BR:
sroe03400
]
JL101_009865
Enzymes [BR:
sroe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JL101_009865
DNA replication proteins [BR:
sroe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JL101_009865
DNA repair and recombination proteins [BR:
sroe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JL101_009865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS
PAS_9
RNase_H_2
PAS_7
PAS_4
PAS_8
DEDDh_C
PAS_10
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
UEM05719
LinkDB
All DBs
Position
complement(2155141..2157225)
Genome browser
AA seq
694 aa
AA seq
DB search
MALLFASVGAVAAVLMILLPAALANADGAGNPVVTQAVGGVAVAVATVFALWRIIDGSIL
RSLAALAGEARVIGHGTVAARVPPERYAALSPLPQAINELGEKLAAARSDIDEAVASSTA
VVQEQKSRLSTLLRDLHEGVLVCNQQHQILLYNQAALTLLHLTADLGLGRNLLQVVTRAP
VLHTLERLTLRVKDGRHHSHPMGVTAEFVAATTDGRYLLQGRMSLILQEEDALTGYVVTF
DDVTAKLAALGKRDAVLRAATEGFRPPVANLLAAAETLSDNPDLDRESRRAFEQVILEEC
AALSGRLESVTADYRSIITGAWPMSDIHSGNLINLVIARVAAAGGPAITLTGLPQWLHGD
SYSLVVLLDHLVRRLGEVTGARNFDLSAETGGSWVFVDISWSGTPVASSVVDGWMEQALP
DALGGLTVTDVLQHHRSELWCDAPRPGQARMRVPLPPTEQLHGHADRAPPSARPEFFDFS
LLHQPIATAELGRTPLDKLTFVVFDTETTGLRPSDGDEIIQIAGVRIVNGRILTGETFSQ
LVDPGRTIPPETIQFHGVTDDMVRGKPRASVVLPQFHLFVSGAVLVAHNAAFDLKFLKMK
EKVSGVRFDHPVLDTMLLSRQLQGPDADHTLDGIAKRLGIQVVDRHTALGDSLLTAAIFL
RFVDMLREQNVITLDDAIRSANMLVELHARERAF
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggccctcctgttcgcgtcggtcggtgcggtcgccgccgtcctgatgatcctgctgccg
gcggcgctcgccaacgccgacggggccggcaatccggtggtgacccaggccgtcggcggg
gtcgccgtcgccgtggccaccgtgttcgccctgtggcggatcatcgacggaagcatcctg
cggtccctggcggcgctggccggagaggcccgcgtgatcggccacggcaccgtggcggcc
cgggtcccgccggagcggtacgcggcgctctcccccctgccccaggcgatcaacgagctg
ggcgagaagctggccgccgcccggtcggacatcgacgaggcggtcgcctcctccaccgcc
gtcgtgcaggaacagaagagccggctgtccaccctgctgcgcgacctgcacgagggtgtc
ctggtctgcaaccagcagcaccagatccttctctacaaccaggcggcattgacgctgctc
cacctgaccgccgatctgggactcggccgcaacctgctccaggtggtgacccgggcgccg
gttctccacacgctggagcggctgaccctgcgcgtcaaggacgggcgtcaccatagccac
cccatgggcgtcacggccgagttcgtcgccgccaccaccgatgggcgctacctgctccag
ggacgcatgagcctgatcctccaggaggaggacgccctgaccggctatgtcgtcacgttc
gacgacgtcaccgccaaactggcggcgctcggcaagcgcgacgcggtgctccgggccgcg
acggaagggttccggccgccggtcgccaacctgctggccgcggccgagaccctgtccgac
aaccccgacctggaccgggagtcgcgcagggccttcgagcaggtgatcctggaggaatgc
gcggccctgtccggccgcctggagagcgtcaccgccgactaccggagcatcatcaccggt
gcctggccgatgagcgacatccattccggcaacctgatcaacctggtcatcgcccgggtc
gccgccgccggcgggcctgccatcaccctgaccggcctgccgcagtggctgcacggcgac
agctacagcctcgtcgtgctgctcgaccatctggtgcggcggctgggcgaagtcaccggc
gcccggaacttcgacctctcggcggagaccgggggctcgtgggtcttcgtcgacatctcg
tggagcggtacgccggtcgcctcctccgtcgtggacggctggatggagcaggccctgccc
gacgccctgggcggcctgaccgtcaccgacgtccttcagcatcaccgcagcgagctgtgg
tgcgacgcgccccggccgggacaggcgcgcatgcgggtgccgctgccgccgacggagcag
ctccacggccatgccgaccgggcgccgccctccgcccggccggaattcttcgatttctcc
ctgctgcaccagccgatcgccacggccgagctgggccggacaccgctcgacaaactgacg
ttcgtcgttttcgataccgaaacgaccggcctgcgcccgtccgacggcgacgagatcatc
cagatcgccggggtccggatcgtcaacgggcgcatcctgaccggcgagaccttcagccag
ctggtcgatcccggccggacgatcccgccggagacgatccagttccacggcgtcaccgac
gacatggtgcgcggcaagccgcgggcatcggtcgtgctgccgcagttccatctgttcgtg
tcgggtgccgtgctggtcgcgcacaacgccgccttcgacctcaagttcctcaagatgaag
gagaaggtcagcggagtgcggttcgaccatcccgtgctcgacaccatgctgctgtcgcgc
cagctccaggggccggacgccgaccacacgctcgacggaatcgccaagcggctgggcatc
caggtggtcgaccgccacaccgcgctgggcgacagcctgctgaccgcggcgatcttcctg
cggttcgtcgacatgctgcgggagcagaacgtcatcacgctggacgacgcgatccgcagc
gccaacatgctggtcgagctgcacgcccgggagcgggcgttttga
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