Skermanella rosea: JL101_010490
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Entry
JL101_010490 CDS
T07666
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sroe
Skermanella rosea
Pathway
sroe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL101_010490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sroe03400
]
JL101_010490 (mfd)
Enzymes [BR:
sroe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL101_010490 (mfd)
DNA repair and recombination proteins [BR:
sroe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JL101_010490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_30
SecA_DEAD
AAA_16
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UEM06593
LinkDB
All DBs
Position
2296871..2300200
Genome browser
AA seq
1109 aa
AA seq
DB search
MARLAEAVGFFAPEIELVQIPAWDCLPYDRVSPNVDIVSRRVEGLTRLIEPGKGRPRLVL
TTVNALLQKVPPRGTFAHATFRAGVGDRIDLDRLQAYLAHNGYTRAQTVREPGEFAIRGG
IVDLFPPGTEEPLRLDLFGDELEGVRAFDPMSQRTTEKRDGIALKPMSEVFLDEQSIARF
RSGYRELFGVVLDEDPLYEAVSAGRKHGGMEHWLPLFHSGMETILDYVHDAVVTLDPQAE
EARDSRLAQIADFYHARKTLQAVEKKANNPVYKPLPPEMLYLDEDGWNALLGVRAVGQLM
PFALAEGQPGVDAGGRRGRDFADARAKPDVNVFDALKSHIEELQKHDRRCVVAGYSQGAR
DRLLTVLRDHGIERVEVCESWEGARRLDRRTTALIVLGIETGFAAPDVAVITEQDILGDR
LARPTKKRRRSANFIAELSSLSEGDLVVHVDHGIGRYDGLETLQVTGAPHDCLRLIYEGG
DKLYLPVENIELLSRYGSEDSAQLDKLGGVGWQGRKARVKKRLKDMAEALLKIAAERELR
RGTPVSAPDGIYAEFAARFPYPETEDQLRAIEEVLEDLQSGRPMDRLVCGDVGFGKTEVA
LRAAFIAALSGMQVAVVVPTTLLARQHSRTFEKRFAGLPVRIGQLSRLVSAKEQKLVKEG
LAAGTIDIVIGTHALLSKTVQFKDLGMVIVDEEQHFGVKQKERLKQLRADVHVLTLTATP
IPRTLQMALAGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQTYYVCPR
LEDLPRVYERLQELVPEVKVVMAHGQMAATQLEEVMTAFDDGQFNVLLATNIVESGLDVP
NANTMIIHRSDLFGLAQLYQLRGRIGRSKVRGYAYLTYAPRTVLSATATQRLHVIETLDS
LGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGVELYQHMLEEAVATARSGAGAAADSED
TWTPTINLGMPVLIPEAYIADLNVRLGLYRRISELVDRSEIDSFAAELIDRFGPLPPEVE
NLLNVMTIKQLCRTAGVERVDAGPKGAVLSFHKNSFARPDQLVIFIGKQAATMKLRPDHK
LVYTRTWDDTATRVKGVQRLMQDLAKLAA
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcctggccgaggcggtcggcttcttcgcgcccgagatcgagctcgtgcagatc
ccggcctgggactgcctgccctacgaccgcgtttcgcccaacgtcgatatcgtcagccgc
cgggtcgaggggctgacccgcctgatcgagcccggcaagggtcggcccaggctggtgctg
accacggtcaacgcgctgctccagaaggtgccgccgcgcgggaccttcgcgcatgccacc
ttccgcgccggcgtcggcgaccgcatcgacctggacaggctgcaggcctatctggcccac
aacggctatacccgcgcgcagaccgtgcgggagccgggcgagttcgcgatccgcggcggc
atcgtcgacctgttcccgcccggcaccgaggagccgcttcggctcgacctgttcggcgac
gagctggagggggtgcgcgccttcgacccgatgagccagcggaccaccgagaagcgcgac
ggcatcgccctgaagccgatgtcggaggtctttctggacgagcagtcgatcgcccgcttc
cgctcgggctatcgcgagctgttcggcgtcgtgctggacgaggacccgctgtacgaagcg
gtcagcgccgggcgcaagcatggcggcatggagcactggctgccgctgttccattccggc
atggaaacgatcctggactatgtgcatgacgcggtcgtgacgctcgatccgcaggcggaa
gaggcgcgggattcccggctggcgcagatcgccgacttctaccatgcgcgcaagacgctg
caggcggtggagaagaaggccaacaatcccgtctacaagccgctgccgccggagatgctg
tacctggacgaggacggctggaacgctctgctgggcgtgcgggcggtaggccaactgatg
cccttcgcgctggccgaggggcagccgggggtggatgccggcggacggcgcggccgggac
ttcgccgacgcccgggccaagcccgacgtcaacgtgttcgacgcgctgaaatcgcacatc
gaggagcttcagaagcacgaccggcgctgcgtcgtcgccggctacagccagggcgcgcgc
gaccggctgctgaccgttctgcgcgaccacggcatcgagcgggtcgaggtctgcgagagc
tgggagggggcgaggcggctcgaccggcgcaccaccgcgctgatcgtgctggggatcgag
accggcttcgccgcgcccgacgtggcggtgatcaccgagcaggacatcctgggcgatcgg
ctggcccggcccaccaagaaacgccgccggtccgccaacttcatcgccgagctgtcgagc
ctgagcgagggcgacctggtcgtccacgtcgatcacggcatcggacgctacgacggcctg
gagacgctccaggtgacgggcgcgccgcacgactgcctgcgtctgatctacgagggcggc
gacaagctctatctcccggtcgagaacatcgagctgctgtcgcgctacgggtcggaggac
agcgcccagcttgacaagctggggggcgtcggctggcagggccgcaaggcccgggtcaag
aagcgcctgaaggacatggccgaggcgctgctgaagatcgcggccgagcgggagctgcgc
cggggcacgcctgtttcggcacctgacgggatctatgccgaattcgcggcgcggttcccc
tatcccgagacggaagaccagctccgcgcgatcgaggaggtgctggaggacctgcagtcc
ggccggccgatggacaggctggtgtgcggcgacgtgggcttcggcaagaccgaggtcgcc
ctgcgcgccgccttcatcgccgcgctgtccggcatgcaggtcgccgtcgtggtgccgacc
acgctgctggcgcgccagcactctcgcaccttcgagaagcggttcgccggcctgccggtc
cggatcggccagctctcccgcctcgtgtcagcgaaggaacagaagcttgtcaaggaaggt
ctcgccgccggaacgatcgacatcgtgatcgggacccacgcgctgctgtccaagacggtg
cagttcaaggacctgggcatggtgatcgtggacgaggagcagcatttcggcgtgaagcag
aaggaacggctgaagcaactccgcgccgacgtccatgtgttgaccctgaccgcgacgccg
atcccgcggacgctacagatggccctggccggggtgcgtgagctgagcctgatcgcgacg
ccgccggtggaccggctggcggtgcggaccttcgtgctgccctacgatccggtggtgatc
cgggaggcgatcctgcgcgagcattaccgcggcggccagacctattatgtctgcccgcgg
ctggaggacctgccgcgcgtctacgagcggcttcaggagctggtgccggaggtcaaggtc
gtgatggcccacggccagatggcggcgacccagctggaggaggtcatgacggccttcgac
gacggacagttcaacgtgctgctggcgaccaacatcgtcgaatcgggcctggacgtgccg
aacgccaacacgatgatcatccaccgttccgacctgttcggcctggcccagctctaccag
ctgcgcggccggatcggccggtcgaaggtccggggatacgcctacctgacctatgcgccc
cggaccgtcctgtccgccaccgcgacccagcggctgcacgtgatcgagacgctggacagc
ctgggcgccggcttccagctcgccagccacgacatggacatccgcggcgccggcaacctg
ctgggcgaggagcagtcgggacatatcaaggaggtcggcgtcgagctgtaccagcacatg
ctggaggaggcggtcgcgaccgcccgcagcggcgccggtgccgccgcggactcggaggac
acctggaccccgacgatcaacctgggcatgccggtcctgatcccggaggcgtacatcgcg
gacctgaacgtacggctggggctgtaccgccggatctcggaactggtggaccggagcgag
atcgacagcttcgcggcggaactgatcgaccgtttcgggccgctgccgccggaggtggag
aacctgctgaacgtcatgacgatcaagcagctctgccgcaccgccggggtcgagcgggtc
gacgccgggccgaagggcgccgtgctctcgttccacaagaacagcttcgcgcggccggac
cagctcgtgatcttcatcggcaagcaggccgcgaccatgaagctgcggccggaccacaag
ctggtctatacccgcacgtgggacgacacggcgacccgggtcaagggcgtgcagcggctg
atgcaggacttggccaagctggcggcctga
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