Skermanella rosea: JL101_026940
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Entry
JL101_026940 CDS
T07666
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sroe
Skermanella rosea
Pathway
sroe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL101_026940 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sroe03019
]
JL101_026940 (pnp)
03016 Transfer RNA biogenesis [BR:
sroe03016
]
JL101_026940 (pnp)
Enzymes [BR:
sroe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JL101_026940 (pnp)
Messenger RNA biogenesis [BR:
sroe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JL101_026940 (pnp)
Transfer RNA biogenesis [BR:
sroe03016
]
Prokaryotic type
tRNA degradation factors
JL101_026940 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
S1_2
aRib
KH_2
Motif
Other DBs
NCBI-ProteinID:
UEM03547
LinkDB
All DBs
Position
5758611..5760722
Genome browser
AA seq
703 aa
AA seq
DB search
MFNVYRKEIDWGGRKLVLETGKVARQADGAVMATYGETTVLCTVVAAKAAKPGVDFFPLT
VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSH
DMENDPDIVAMVGTSAALTISGIPFLGPIGAARVSYRNGEYTLNPLVDDEEGDLDLVVAG
TRDGVLMVESEAKELSEDVMLGAVMFGHRSFQPVIDAIIELAEQCAKEPWDMPSAPYDAA
AIKARVKEIVGEDIKAAYSEIRKQDRQNKLGAAKLKALEALTSDEIPAEAIAGTFKDVES
DVLRGTVIDTGRRIDGRSTTDIRQIVAEVGVLPRAHGSALFTRGETQALVVATLGTSQDE
QIIDALEGEYRESFMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRAVRPLLPTKEQFP
YTMRIVSEITESNGSSSMATVCGASLALMDSGAPLPRPVAGIAMGLIKEDRGFAVLSDIL
GDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMRVALDQARGGRMHILGEMAKAIG
GAREAVNQNAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIEDDGTVKVAAVDG
KASQAAIDWIRGIVAEPELGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISELKNERVGKV
SDVVKQGDEVKVKVLGFDDRGKVKLSMKTVDQATGEDLSKKAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgtctacagaaaagaaatcgattggggcggacgcaagctggtcctggagacc
gggaaggtcgcccgccaggccgatggcgccgtgatggcgacgtacggcgagacgaccgtg
ctctgcaccgtcgtcgcggccaaggcggccaagcccggggtcgatttctttccgctgacc
gtcaattaccaggaaaaggcgttcgccgccggcaagatcccgggcggcttcttcaagcgt
gaaggccgtccctccgagaaggagacgctggtcagccgcctgatcgaccggccgatccgc
ccgctgttcgccgacggcttccgcaacgagacgcaggtcatctgcaccgtgctcagccac
gacatggagaacgatcccgacatcgtcgccatggtcggcacctcggccgccctgaccatc
tcgggcatccccttcctgggcccgatcggcgccgcccgcgtcagctaccggaacggcgag
tacacgctgaacccgctggtcgacgacgaggagggcgacctcgacctggtagtcgcgggt
acgcgcgacggcgtgctgatggtcgagtccgaggccaaggaactgtccgaggacgtcatg
ctgggcgccgtcatgttcggccaccgcagcttccagccggtcatcgacgcgatcatcgag
ctggccgagcagtgcgccaaggaaccctgggacatgccctcggccccctatgacgccgcc
gccatcaaggcccgcgtcaaggagatcgtcggcgaggacatcaaggcggcctattccgag
atccgcaagcaggaccgccagaacaagctgggcgccgccaagctgaaggcgctggaggcc
ctgacctcggacgagatccccgccgaggcgatcgccggcaccttcaaggatgtcgagagc
gacgtgctgcgcggcacggtcatcgacaccggccgccggatcgacggccgctcgaccacc
gacatccgccagatcgtggccgaggtcggcgtgctgccccgcgcccacggctccgccctg
ttcacccgcggcgagacccaggccctggtggtcgccacgctgggcaccagccaggacgag
cagatcatcgacgcgctggaaggcgagtaccgcgagagcttcatgctccactacaacttc
ccgccctactcggtcggcgaggcgggccgcgtcggctcccccggccggcgcgagatcggt
cacggcaagctggcgtggcgcgcggtccggccgctgctcccgaccaaggagcagttcccc
tacaccatgcggatcgtgtcggaaatcaccgagtccaacggctcctcgtcgatggcgacc
gtctgcggcgcctcgctggcgctgatggactccggcgctcccctgccccgcccggtcgcc
ggcatcgccatgggcctgatcaaggaagaccgcggcttcgccgtgctgtccgacatcctc
ggcgacgaggaccacctgggcgacatggacttcaaggtggccggcaccgagaagggcgtc
accgcgctccagatggatatcaagatcacctcgatcaccgaggagatcatgcgcgtcgcc
ctggaccaggcgcgcggcggccggatgcacatcctgggcgaaatggccaaggcgatcggc
ggcgcccgcgaggcggtcaaccagaacgccccgcgcatcaccgtgatcaacatccccaag
gagaagatccgcgacgtgatcggctccggcggcaaggtgatccgcgagatcgtcgagcag
accggcgccaagatcgacatcgaggacgacggcacggtcaaggtcgcggctgtcgacggc
aaggccagccaggcagccatcgactggatccgcggcatcgtggccgagccggagctgggc
gtggtctacaccggcaaggtcgtgaaggtggtcgatttcggcgccttcgtgaacttcctg
ggctcgcgcgacggtctggtccacatctccgagctgaagaacgagcgcgtcggcaaggtc
agcgacgtggtcaagcagggcgacgaggtgaaggtcaaggtcctgggcttcgacgaccgc
ggcaaggtcaagctgtccatgaagacggtcgaccaggcgaccggcgaagacctgagcaag
aaggccgagtag
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