KEGG   Skermanella rosea: JL101_032210
Entry
JL101_032210      CDS       T07666                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
sroe  Skermanella rosea
Brite
KEGG Orthology (KO) [BR:sroe00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:sroe02044]
    JL101_032210 (tssC)
Secretion system [BR:sroe02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   JL101_032210 (tssC)
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: UEM07679
LinkDB
Position
pSR-2:complement(166512..167996)
AA seq 494 aa
MQQAAPPVAEATLTDDGFAQLLQREFKPRTEQYRDAIERAVATLAGQALAETRLIGDDAV
ATIQAIVAELDRKLTEQLNLIIHHPDFQQLEAAWRGLHQLVFNTETDETLKIRVLNTSKK
ELARSARKYRGIAWDQSPLFKKIYEEEFGQIGGEPYGCLIGDFHFDHTPPDVELLASLGQ
IAAAAHAPFIAAAAPQLLNMESWQELANPRDLTKIFQTPEYAAWRSLRDSEDSRYIALTL
PRTLGRLPYGSKTDPVAEFAFEEDVDGGDSGKYLWCNAAYAMGVNITRSYKLYGWMSQIR
GVESGGLVEGLPAHTFPSDDGGVDLKCPTEIAISDRREAELSRNGLLPMLHRKNTDMAVF
IGAQTLNKPIKFDDPDASANAELSARLPYMFATSRFAHYLKCLVRDKIGSFKDRSDVEAW
LNRWIQNYVHSSPNLASEEDKAKKPLAAAEVIVEEVQDNPGYYQARFYLRPHFQLEGLTV
SLRLVSRLPSAKLA
NT seq 1485 nt   +upstreamnt  +downstreamnt
atgcagcaggcggcaccgcctgtcgcggaagccaccctgaccgacgacggcttcgcccag
ctccttcagcgcgagttcaagccgcgcaccgaacagtaccgcgacgcgatcgagcgcgcg
gtggcgaccttggcagggcaggcgctggccgaaacccggttgatcggcgacgatgccgtc
gccacgatccaggcgatcgtcgcggaactcgaccgcaagctgaccgaacagctgaacctg
atcatccatcatcccgatttccagcagttggaagcggcatggcgcggccttcaccagctc
gtcttcaacaccgaaaccgacgaaaccttgaagatccgggtgctgaacaccagcaagaag
gaacttgcgcgttccgcgcggaagtaccgggggatcgcctgggatcaaagcccgctattc
aagaagatctacgaggaggagttcggccagatcggcggcgagccttatggctgcctgatc
ggcgacttccacttcgaccacacgccgcccgacgtcgagctgctcgcgtccctcggtcag
atcgcggcggcggcgcatgcccccttcatcgctgccgcggcccctcagctcctcaacatg
gaatcctggcaggaactcgccaatccgcgcgatctcaccaagatcttccagacgccggaa
tacgcggcctggcgatcgctgcgggactccgaggactcgcgctacatcgcgctgacattg
ccccgcacgctcggacgcctgccctacggcagcaagaccgaccccgtcgccgaattcgcc
ttcgaggaggacgtcgacggcggtgacagcggcaagtatctctggtgcaacgccgcctac
gcgatgggcgtcaacatcacccgctcctacaagctgtatggctggatgtcgcagatccgc
ggggtcgaatccggaggcttggtcgagggacttcccgcccacacctttccgagcgacgac
ggcggcgtggacttgaagtgtcctaccgagatcgcgatcagcgaccggcgcgaggcggag
ctttcgcggaacgggctgctgccgatgctccaccgaaagaacaccgacatggcggtcttc
atcggggcgcagaccctcaacaagccgatcaagttcgacgatccggacgcctcggccaat
gccgagctgagtgccaggctgccttacatgttcgcgacgtcacgcttcgcccattacctg
aagtgcctggtgcgcgacaagatcggttccttcaaggaccggtcggatgtcgaggcctgg
ctcaatcgctggatacagaactacgtccactcgtcgccgaaccttgcgagcgaggaggac
aaggcgaagaaacccttggccgccgccgaggtcatcgtcgaggaggtccaggacaatcca
ggctactaccaggcccgcttctacctgagaccgcatttccagctcgaagggctgacggtt
tcgcttcgcctcgtgtcccggctgccttccgccaagctggcgtga

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