KEGG   Spiribacter roseus: BBH56_01885
Entry
BBH56_01885       CDS       T06143                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
sros  Spiribacter roseus
Pathway
sros02024  Quorum sensing
sros03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sros00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBH56_01885
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BBH56_01885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sros03019]
    BBH56_01885
   03036 Chromosome and associated proteins [BR:sros03036]
    BBH56_01885
Messenger RNA biogenesis [BR:sros03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BBH56_01885
Chromosome and associated proteins [BR:sros03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BBH56_01885
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: AUB77986
UniProt: A0ABV3S0P3
LinkDB
Position
375684..375935
AA seq 83 aa
MSKGQSLQEPFLNALRKEKVPVSIYLVNGIKLQGQVDSFDQFVILLRNSISQLVYKHAIS
TIVPSRNVRELLQEERDPETDPE
NT seq 252 nt   +upstreamnt  +downstreamnt
atgtcgaaaggacaatcactgcaggaacccttcctcaacgcgcttcgcaaggaaaaggtc
ccggtgtcgatctatctggtcaatggcatcaagctccagggtcaggtggactcgttcgac
cagttcgtgatcctgcttcgcaactcgatcagtcagctggtctacaaacacgccatttcc
acgatcgtgccatcgcgcaacgtccgcgagcttctgcaggaggagcgagatcccgaaacc
gacccggagtga

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