Spiribacter roseus: BBH56_01935
Help
Entry
BBH56_01935 CDS
T06143
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sros
Spiribacter roseus
Pathway
sros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH56_01935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sros03019
]
BBH56_01935
03016 Transfer RNA biogenesis [BR:
sros03016
]
BBH56_01935
Enzymes [BR:
sros01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BBH56_01935
Messenger RNA biogenesis [BR:
sros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBH56_01935
Transfer RNA biogenesis [BR:
sros03016
]
Prokaryotic type
tRNA degradation factors
BBH56_01935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
HTH_Crp_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AUB77995
LinkDB
All DBs
Position
384559..386904
Genome browser
AA seq
781 aa
AA seq
DB search
MTEKDTESADPSRDPYLDREKGKYESPVPSREYITQQLEAQARPLSRKDLAELFGLTDED
ALEGLRRRLKAMERDGQLVRNRRNGYVVVDNQELVRGRIRSSPDGSGVVHPDRPGPNVYL
APREMHRLLNRDRVVVRLTGDDDDGRPTGELVEIIEHANQEIAGRYYEESGIGFVVPNNK
RLHQDLIIPGADANGAANGELVTAEVVSQPSQRRQPIGRIIEVFGTRIAPGDEVAVAART
HGIPVEWPDEVLAEAAGFGDEVPESSKAGRKDLRQLPLVTIDGADARDFDDAVYCEPTAS
GWKLIVAIADVGAYVTPGSALDTEAAERGNSCYFPRNVVPMLPENLSNGLCSLNPGVDRL
CMVCEMQIDREGQLKRSRFYEGLMKSAARLTYEDVDAIHNERDPSLLREHEPLLKHIGDL
YAVFDALRIDRQKRGAIDFNTSESVIEFDHQGQVADVHPAERTNAHRLIEECMVKANVAT
ARFLRRHRIPSLYRVHEPPAEQRLKNLREFLAQTGLTLGGGDEPTAQDFSALMETVKQRP
DRHFIESIMLRSMMAAEYRPDNAGHFGLALDAYAHFTSPIRRYPDLIVHRGIKHVLSKQP
IEAFEYTEDQLVTVGEHCSMTDRRAEEATREALMTLKCRFMASRIGEEFTGVISGVTSFG
LFVELDGLYVDGLIHITNLEQDFFHFDAIGHRLVGERTGKEYRLTDRIRVRLAQVNVDDG
KIDFDPIAHPLGPDGEPLGDSAGSRSKGNGKGRDKGKDRSKSGGKSRNGRRSESRNRRRR
G
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaaagacaccgaaagcgcggatccctcccgcgatccgtatctcgatcgcgag
aaaggcaagtacgaatccccggttcccagccgggaatacatcacccagcaactcgaggcc
caggcccgccccctgtcccgcaaggacctggccgaactgttcgggctgaccgacgaggat
gcgctcgagggcctgcggcggcgcctcaaggccatggagcgtgacggccagctggtgcgt
aaccggcgcaacggctatgtggtggtcgataaccaggagctggtccgcgggcgcatccgc
tcatcgccggacggctcgggggtcgtccatcccgaccgtccggggccgaatgtctatctc
gccccccgcgagatgcaccggctgctcaaccgcgaccgggtggtggtgcgactgaccggc
gacgatgacgatggccggcccaccggcgaactggtcgagatcatcgagcatgccaatcag
gaaatcgccgggcgttattacgaggaaagcgggatcggctttgtggtccccaacaacaag
cgcctgcatcaggatctgatcatccccggcgcggacgccaatggcgctgccaacggcgag
ctggtgaccgccgaagtggtcagtcagccctcgcagcgccgtcagcccattggccgcatc
atcgaggtgttcggtacccgcatcgccccgggcgacgaggtggcggtggcggcgcgcacc
cacggcataccagtggaatggcccgacgaggtgctggccgaagccgccggctttggcgac
gaggtgcccgagtcgagcaaggcggggcgcaaggatctgcgccagctcccgctggtgacc
atcgacggtgccgatgcgcgtgactttgacgacgcggtctactgcgagcccaccgccagc
ggctggaaactgatcgtggcgatcgccgatgtgggcgcctacgtcacgcccggctcagcg
ctggacacggaggcggcagaacgtggcaattcctgctatttcccgcgcaatgtcgtgccc
atgctgccggagaatctctccaacggactgtgttcgctcaatcccggcgtcgaccggctg
tgcatggtctgcgaaatgcagatcgaccgcgagggtcagctcaagcgctcgcggttctat
gaggggctgatgaagtcggcggcgcgcctgacctacgaggacgtggacgcgatccataac
gagcgcgacccttcgctgctgcgcgagcatgagccgctgctcaagcacatcggcgatctc
tatgcggtgttcgatgcgctgcggatcgatcgccagaagcgcggcgccatcgatttcaat
accagcgagtcggtgatcgagtttgatcaccagggccaggtcgccgacgttcatcccgcg
gagcggaccaatgcccatcgcctgatcgaggagtgcatggtcaaggcgaatgtcgccacc
gcacgcttcctgcgccggcatcgcattccgtcgctgtaccgggtgcatgagccgccggcg
gagcagcgcctgaagaatctgcgcgagttcctggcccagaccggtctcaccctggggggt
ggcgacgagcccaccgcccaggacttctcggcgttgatggaaaccgtcaagcagcgcccc
gaccgccacttcatcgagtcgatcatgctgcgctcgatgatggcggcggagtatcgcccg
gacaacgccggccatttcggactggcgctggatgcctacgcgcatttcacttcgccgatc
cgtcgctatcccgacctgatcgttcatcgcggcatcaagcatgtgctgtccaagcagccg
atcgaggcgttcgagtacaccgaagaccagttggtgaccgtgggcgagcactgctcgatg
accgaccgccgcgccgaggaagccacccgcgaggcgttgatgaccctcaagtgccggttc
atggcgagccgcattggcgaggagttcaccggcgtgatcagcggcgtgacctcgttcggg
ctgttcgtcgaactggatggcctgtacgtcgacgggctcattcatatcaccaacctcgag
caggacttcttccacttcgacgccatcggccatcgcctggtgggcgagcgcaccggcaag
gagtaccggctcaccgaccgcatccgggtccggctggcccaggtgaacgtcgacgacggc
aagatcgacttcgaccccattgcccatcccctggggccggatggcgagccgctgggtgac
agcgccggcagccggtcgaaaggcaacggcaagggcagggacaagggcaaggatcggagt
aagtcggggggcaagtcccgcaacggccgtcgctcggagtcgcgcaaccgccgccggcgc
ggatga
DBGET
integrated database retrieval system
