Spiribacter roseus: BBH56_01995
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Entry
BBH56_01995 CDS
T06143
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sros
Spiribacter roseus
Pathway
sros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH56_01995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sros03019
]
BBH56_01995
Enzymes [BR:
sros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBH56_01995
Messenger RNA biogenesis [BR:
sros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBH56_01995
BRITE hierarchy
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUB78006
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All DBs
Position
complement(395041..396165)
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AA seq
374 aa
AA seq
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MTFDDFGLQTELLDAVKASGYTTPTSIQEQAIPQVLDGKDLLGAAQTGTGKTAAFTLPLL
QRLAAVEPQGKRRPVRLLIIAPTRELAAQIHDSVKQYGRNLPLRSAVIFGGVGMQPQIDR
LRKGVDIVIATPGRLLDHLQRDNLRLDRVESVVLDEADRMLDMGFIHDIRKVMKKLPTER
QTLMFSATFSREIRQLAGGMLKNPVEIDVAPKHSAADTVEQSVYRLDKAEKRPLLSRLIR
EGDWQQVLVFTRTKHGANNLSKQLDKDGLSTAAIHGNKSQTARTKALDGFKKGHVRVLVA
TDIAARGLDIDQLPHVVNFDLPHVAEDYVHRIGRTGRAGNSGEAISLVAPDEGKLLKGIE
RLLKRSLRRADAAA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatgatttcggtctccagaccgaactgctcgacgccgtgaaggcatcgggc
tacaccaccccgacgtccattcaagagcaggccatccctcaggtccttgacggcaaagac
ctcctcggcgccgcccagaccggcaccggcaagaccgccgccttcactctgccgctgctc
cagcggcttgccgcggtcgaaccccagggcaagcgccgccccgtgcggctgctcattatt
gcccccacccgcgagctggcggcccagatccatgacagtgtcaagcagtacggccgcaat
ctgccgctgcgctcggctgtcatattcggcggcgttggcatgcagccccagatcgatcgt
ctgcgcaagggggtcgatattgtcatcgccaccccgggacgcctgctcgatcacctccag
cgcgacaacctgcgcctcgaccgcgtcgagagcgtggtactggatgaagccgaccgcatg
ctcgacatgggcttcattcacgacatccgcaaggtcatgaaaaagctgcccaccgagcgg
cagacgctgatgttctcggccactttctcccgcgagatccgccagcttgccgggggcatg
ctgaaaaaccctgtcgaaatcgacgtcgcccccaagcacagtgccgccgacacggtggag
cagtcggtctatcgcctggacaaggctgagaagcggccgctgctaagccgcctgatccgc
gagggcgactggcagcaggtgctggtgttcacccgcaccaagcacggcgccaacaacctg
agcaaacagctcgacaaggatgggctgagcaccgccgcgattcatggcaacaagagccag
acggcgcgcaccaaggcgctggatggttttaaaaagggtcacgtgcgggttctggtggcc
accgacatcgccgcccgcgggctcgacatcgaccagctgccccatgtggtcaactttgac
ctgccgcatgtggccgaggactacgtccatcgcattggtcgcaccggtcgtgccggcaat
tccggtgaggcgatttcgctggtggcgccggatgagggcaaactgctgaaaggcatcgag
cgcctgctcaagcgctccctgcggcgcgccgacgccgccgcctga
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