Spiribacter roseus: BBH56_02440
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Entry
BBH56_02440 CDS
T06143
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sros
Spiribacter roseus
Pathway
sros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH56_02440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sros03019
]
BBH56_02440
03016 Transfer RNA biogenesis [BR:
sros03016
]
BBH56_02440
Enzymes [BR:
sros01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BBH56_02440
Messenger RNA biogenesis [BR:
sros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBH56_02440
Transfer RNA biogenesis [BR:
sros03016
]
Prokaryotic type
tRNA degradation factors
BBH56_02440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
AUB78076
LinkDB
All DBs
Position
479539..481650
Genome browser
AA seq
703 aa
AA seq
DB search
MTPTAVKKSFQYGEHNVTLETGRIARQASGAVMVNMADTVVLVTVVGKREVVPGRSFLPL
TVNYQERTYAAGKIPGGFFKREGRPSEKETLVCRLIDRPIRPLFPNGFTNEVQVVATVIS
MNPEVDPDIPALIGTSAALAVSGIPFDGPIGAARVGYRDGGFVLNPAISQLEDSALDLVV
AGTEQGVLMVESEADRLPEQTMLDAVLFGHEQMQSAITAINELAAEAGKPRWDWSPETAD
QTLAERVREHAEKPLTDAYAVADKQARQEAVASVRETVNAALVAADDSEHGWSAEAVSDA
FKALEKTIVRGRILAGERRIDGRDNQSVRPIDIEVGSLPRTHGSAIFTRGETQAIVVTTL
GTGRDAQIIDGIEGERREPFMLHYNFPPYSVGEAGFMGTPKRREIGHGKLAKRGVQAVMP
EPEDCPYVVRVVSEITESNGSSSMASVCGTSLSLMDAGVPIKAPVAGIAMGLIKEGDDFA
VLTDILGDEDHLGDMDFKVAGTDSGVTALQMDIKIDGITREVMEQALSQARDGRLHILGE
MNGVIAEHREEMSAYAPRLITLRIDPDKIRDVIGKGGATIRQLTEETGTTIDITDEGVVT
IGSVDKAAGEEARRRIELLTADVEVGQVYEGKVIKLMDFGAFVNILPGRDGLVHISQISD
RRVESVSDELAEGQNLRVKVLEVDRQGRIRLSIKALGEEEAES
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgactccaaccgccgtcaaaaaatctttccaatacggggaacacaacgtcacgctcgag
accggcaggattgcccggcaggcgagcggggcggtcatggtcaacatggccgataccgtt
gtccttgtcacggtcgtcggcaagcgcgaagtcgtgcccggacgaagctttctgccgctc
acggtcaactaccaggagcggacctacgcggcgggcaagatccccggcggattcttcaag
cgcgagggccggccgtccgagaaggaaaccctggtctgtcgtctgatcgaccggccgatc
cggccgctcttccccaacggcttcaccaatgaggtgcaggtcgtcgccacggtgatttcc
atgaaccccgaggtcgatcccgacatcccagcactgatcggcacctcggcggcgctcgcg
gtcagcggcattccgtttgacgggcccatcggcgccgcgcgcgtcggttatcgggatggc
ggattcgtcctcaacccggcgatctcgcagctcgaggactccgcactggacctggtggtg
gcgggcaccgagcagggtgttctcatggtcgagtccgaggccgaccggctgcccgagcag
accatgctcgacgcggtgctgttcggtcacgagcagatgcagtcggccatcacggccatc
aacgagctggcggccgaggccggtaagccgcgctgggactggtcgccggagacggccgac
cagacgctggccgagcgggtgcgcgagcacgccgagaagccgctgaccgacgcctatgcc
gtggccgacaagcaggcccggcaggaggccgtcgccagtgtgcgcgagaccgtcaacgcg
gcgttggtcgccgccgacgacagcgagcatggctggtccgcggaagcggtgagtgatgcg
ttcaaggccctcgagaagaccatcgttcgcggtcggatcctcgccggcgagcggcgcatc
gacgggcgggacaaccagagcgtgcggcccatcgacatcgaggtcgggtcgctgccgcgt
acccatggctcggcgatcttcacccgcggtgagacccaggcgatcgtggtcacgaccctc
ggcaccggccgcgatgcgcagatcatcgacggcattgagggcgagcgccgcgagccgttc
atgttgcattacaacttcccgccctacagcgtcggcgaggccggcttcatgggcacgccc
aagcgccgcgagatcggccacggcaagctcgccaagcgcggcgtccaggcagtgatgcca
gagcccgaggactgcccctacgtggtgcgcgtggtctccgagatcaccgagtccaacggt
tcgagttccatggcgtcggtctgcgggaccagtctgtcgctgatggacgccggcgtaccg
atcaaggcgccggtggccggtatcgccatggggctgatcaaggaaggcgatgactttgcc
gtgctcaccgacatcctcggtgacgaggatcacctcggcgacatggacttcaaggtggcc
ggcaccgatagtggtgtgacggcgctgcagatggacatcaagatcgatggcatcacccgc
gaggtcatggaacaggccctgagccaggcccgcgacgggcgcttgcatatcctcggcgag
atgaacggcgtcatcgccgagcatcgcgaggagatgtccgcctacgcgccgcgactgatc
accctgcggattgatccggacaagatccgggacgtcatcggcaagggcggcgccaccatc
cgccagcttaccgaggagaccggcaccaccatcgacatcaccgatgagggcgtggtcacc
atcggatcggtggacaaggcggctggcgaggaggcccggcgccggatcgagctgctgacc
gccgacgtcgaagtcgggcaggtctatgagggcaaggtcatcaagttgatggatttcggc
gcctttgtgaacatcctccccggtcgcgatgggctggtgcacatctcgcagatctcggac
cggcgggtggagagcgtctccgacgagctcgccgagggtcagaacctgcgggtgaaagtc
ctcgaggtggatcgccagggccgtatccgcctgagcatcaaggcgcttggcgaggaagag
gccgagagctga
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