Spiribacter roseus: BBH56_03985
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Entry
BBH56_03985 CDS
T06143
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sros
Spiribacter roseus
Pathway
sros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH56_03985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sros03019
]
BBH56_03985
03009 Ribosome biogenesis [BR:
sros03009
]
BBH56_03985
Enzymes [BR:
sros01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBH56_03985
Messenger RNA biogenesis [BR:
sros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBH56_03985
Ribosome biogenesis [BR:
sros03009
]
Prokaryotic type
rRNA processing factors
BBH56_03985
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
AUB78340
LinkDB
All DBs
Position
804877..807483
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AA seq
868 aa
AA seq
DB search
MLVNATQPEELRVALVDGQSLYDLDIETPARERKKANIYKGRITRVEPSLEAAFVQYGAE
RHGFLPFKEIAREYFSGDSDVDPAKVSIADVIAEGLEVVVQVEKEERGTKGAALTTFVSL
AGRYLVLMPNNPRAGGVSRRIEGNERNEIRDALKALEVPDGMGVIVRTAGVGRSAEELQW
DLDYLRNLWSAVGKAAETRAAPFLIYQESNVIIRALRDYLRADIGEILIDDRDVYERARE
FVEQVMPHNLQKLKFYDDRVPLFSRYQIESQIESAFQREVRLPSGGVIVIDHTEALISID
INSARATKGADIEETALKTNLEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQREVENRV
RDSVKQDRARVQLGRISRFGLLEMSRQRLRSSLGEAALEVCSRCSGQGTVRSVESLALSV
LRIIEEEAMKDKTGKVVAQLPVDVATFLLNEKRGILETIETRNGIGVILIPNRALETPHY
ELQRVRTDEDLPAENSYDLSSEDTAPSRAEELLTAERPRTERPVVSGVSAGRPAPTPQQP
AAEASPAASPAAESTPAAVAPTPEPGTPRAPGLIGWLKRLVSGDDDGTRHSPMTDSNRSE
AGTRSTESDETETSEGTGQRNRSGNGRRRRSGGGGQSSSGNRRGGQRRSRSGGNGNDDDA
TPRGAGTSAASTESDASEPARNTRKKKAAEDKPAAKKSASKPAAKPAAKDETPAAESTAT
GGAEQTEARNDGNGEEGSDANEAASGSTRSRRGRRGGRRRRRNGGNGGAAEDTGSGAENG
ADTESADSAAPGDGEKPAPKAKAASRSRKADKGEAKTKAQETESAPSNGASAETGGAGRT
HDPRRWSGRPRLPANEADAASPGDNAGD
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtcaatgcaacccagcccgaagagctgcgggttgcgctggtggacggccagtcc
ctctacgacctcgacatcgagacccctgcacgggagcgtaaaaaagccaacatttacaaa
ggccggatcacccgggtcgagcccagcctcgaggccgcctttgttcaatatggtgccgag
cgccacggctttctgccattcaaggagatcgcacgcgagtacttctctggcgacagcgac
gttgatcccgccaaagtctccatcgccgatgtcatcgccgaaggccttgaagtcgtggtg
caggtcgaaaaggaggagcgtggcaccaagggcgccgcgctgaccaccttcgtcagcctc
gccggccgctacctggtcctgatgcccaacaatccccgcgcgggcggtgtatcccggcgc
atcgagggcaatgagcgcaacgagatccgggatgctttgaaagcgctcgaagtccctgac
ggcatgggggtgatcgtgcgcaccgccggtgtcggccgcagcgccgaagaactgcaatgg
gatctggactatctgcgtaacctctggtcggcggtgggcaaggccgcggagacccgggcg
gcgcctttcctgatctatcaggaaagcaacgtcatcatccgtgccctgcgcgactatctg
cgcgccgacatcggcgagatcctcatcgacgatcgggatgtctacgagcgggcccgcgag
ttcgtcgagcaggtcatgccccacaacctgcagaagctcaagttctacgacgaccgtgtg
ccgctgttcagccgctatcagatcgaaagccagatcgagtcggccttccagcgcgaggtg
cgcctgcccagcgggggcgtgatcgtcatcgaccacaccgaggcgctgatctccatcgac
atcaactcggcgcgcgccacgaagggtgcggacatcgaggaaacagcgctcaagaccaat
ctggaggccgccgacgagatcgcccgacagctgcggctgcgggatctcggcggtctgatc
gtcatcgatttcatcgacatgggccccaaccgcaaccagcgcgaggtcgaaaaccgggtc
cgtgattcggtcaagcaggaccgcgcccgcgtccagctggggcgcatttcgcggtttggc
ctgctggaaatgtcgcgccagcgactgcgctcgtcgctgggtgaggcggcgctcgaggtc
tgcagtcgctgcagcggccagggcaccgtgcgcagcgtcgaatccctcgccctgtcggtg
ctgcggatcatcgaagaagaggcgatgaaggacaagacgggcaaggtggtcgcccagctt
ccggtggacgtggcgaccttcctgctcaatgaaaagcgcggcatcctcgagaccatcgag
acccgcaacgggatcggcgtcatcctcattcccaaccgggcgctcgaaacgccgcattac
gaactccagcgcgtgcgcaccgacgaggatctgccggcggagaacagctacgacctgagc
agcgaagacaccgccccgagccgggccgaagagctgctcaccgccgagcggccccgcacc
gaacgccccgtcgtcagcggggtcagcgccgggcggccggcacccaccccgcagcagccc
gcggctgaagcatcaccggcggcgagcccggcggccgagtcgacaccggccgccgttgcc
cccacgcccgagcccggcacaccgcgtgcgcccggactgatcggctggctgaaacgcctg
gtcagtggcgatgatgacggcacacgacactcaccgatgaccgactcgaaccggagcgag
gcgggcacccggagcacggagtcggacgagaccgaaaccagcgaggggacggggcagcgt
aaccgcagtggcaatggccgacgccgtcgcagcggcggcgggggtcagtcatcctccggc
aaccgtcggggcggtcagcgacgcagccgcagcgggggcaacggcaatgacgacgacgcc
accccgcgcggcgccgggacaagtgcggcaagcactgagtcagacgcctcggagcctgcc
cgcaacacgcgcaagaaaaaggctgccgaagacaagccggccgcgaaaaagtccgcgtcg
aagccggcggcgaaacccgccgcgaaggatgaaacgccggcggcagaatccaccgcgacc
ggcggtgccgagcagactgaagcgcgcaacgacggcaatggcgaggaaggcagcgacgcc
aatgaggcggccagtggcagcacccgtagccgccggggacgccgcggcggccgccgccgg
cgtcgtaacggcggcaacggcggagccgctgaggatacgggttcgggcgccgagaatggt
gccgataccgaatcagcggactccgccgcgccgggcgatggggagaagcctgcgcccaag
gccaaggcggcctcccgatccaggaaggccgacaagggcgaggccaagaccaaagcgcag
gaaactgaatcggctccgagcaatggcgcgtctgccgaaaccggtggcgccgggcgcacg
cacgatccgcgccgctggtccgggcgtccgcggcttcccgccaatgaggccgatgcggcc
tcgcctggcgacaacgccggcgactag
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