Spiribacter roseus: BBH56_05490
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Entry
BBH56_05490 CDS
T06143
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sros
Spiribacter roseus
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sros03019
]
BBH56_05490
Enzymes [BR:
sros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBH56_05490
Messenger RNA biogenesis [BR:
sros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBH56_05490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
FtsK_SpoIIIE
AAA_19
nSTAND3
T2SSE
NACHT
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AUB78603
LinkDB
All DBs
Position
complement(1113372..1117112)
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AA seq
1246 aa
AA seq
DB search
MAEHSNAPPTRSAAKARAAREAITLRPDYALDLPVLEHAEAIKAAVRDHPVVVVCGETGS
GKSTQLPKLMLDLGRGIDGMIAHTQPRRIAARSLAGRVAEECGTRVGSGVGYRVRFSDQT
GPETRIKLLTDGMLLAETQADDRLEGYDTVIIDEAHERSLNIDFLLGYLKRLLPRRPDLR
VIITSATIDPVRFSQHFDDAPVIEVSGRTYPVEVRYRPLVEQSEDERERSLRQGVVEAVD
ELAGLGRGDVLVFLPGEREIRQCAEALRKHHPPHTEVLPLFGRLSTAEQQRVFAPHRGRR
IVLSTNVAETSLTVPGIRYVVDSGLARISRYSYRTKVQRLPVEPVAQSSADQRAGRCGRE
GPGVCIRLYDAADFEARPRFTDPEILRTNLASVILQMKHLRLGAIERFPFIEPPDPRYVK
DGLKLLDELGALNRRQNLSRLGRQLARLPVDPRIARILLAGDREGALDELLVIAAALSVQ
DPRERPMDRREAADAAQSAWQDKRSDFGGQLRLWAAYREQAHHLSRRKLQAWCHEHFLSH
VRMREWADTHAQLRRLVRDMGLTENTAPARPVAIHRALLSGFLSNIARREDGGEYVGPRG
LKLAIHPSSAVARQRPRWIMAAELVETSRVFARVAADVRPEWIEPLAGHLLKRRHRDPWW
EAGRGKVFGREDATLYGLPIVTGRKIDYARVAPAEARQVFIREGLLGEPPPDPPAFLRAN
QDLIAEVETLEAKTRRRDVLVDHEALAAFYDAALPAAVVDGPSLDRWLRDGGDDRALRLD
RDQLMARGVTEGAADYPDTFDVNGVRLPLRYAFTPGSEVDGVTVCIPVAALNALSPEPFE
WLVPGLLEEKVVTLIRALPKALRRHFVPVPDFARAVLESLPTREGSLEAAVRAELRRMTG
IDIPGGLWDELVLPGHLQMRFEVLDEAGALLDSGRDLPALQRSCADHAARDFRAPADSSF
ERTGITDWDIGTLPERVPFVQGGIELQGYPALCAEQGAVALRLLDGPERAAIAHREGVRS
LLMKRFAQQARHLRRGLEGLDRMAIDYRDVGDADEFKRGFVAAVFDQVFLAGTVPRDRAS
WLEICEQGRTAIIPHGEQLRDRVSDILSRQKRVRRALKGNIPLGMMDSYQDLRQQLDGLV
YPGFLLDTDPERLADLPRYLAGMARRLERLQQDPNRDAAGLAAIQPHQRRLDEALARHAR
RAIRDPALAQVRWLVEEYRISLFAQDLGTRERVSEKRLARAWEAVR
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcactccaacgcccccccgacgcgtagcgctgcgaaggcccgggccgcccgg
gaggcgatcacgttgcgcccggattatgccctggatctgcccgtcctcgagcatgccgag
gccatcaaggcggcggtgcgcgatcatcccgtggtcgtggtctgcggcgagaccggatcg
ggcaagagcacgcagctgcccaagctcatgctcgatctcggtcgcggtatcgacgggatg
atcgcgcatacccagccacggcgcattgccgcccgcagcctcgccggccgtgtggctgaa
gagtgtgggacgagagtgggcagcggggtcggctaccgggtgcgtttcagtgaccagacc
gggccggaaacgcgcatcaagctgctcaccgacggcatgctactcgccgaaacccaggcc
gacgatcggcttgaaggctacgacacggtcatcatcgacgaggcccatgagcgcagcctg
aacatcgacttcctgctcgggtacctcaagcgcctcctgccccgacggcccgatctgcgc
gtgatcattacctcggcgaccatcgatccggtccggttctcgcaacacttcgacgatgcc
cccgtgatcgaggtctcgggacgcacctacccggtggaggtccgctaccggccgctggtc
gaacagtcggaggatgagcgcgaacgcagcctgcgccagggcgttgtcgaggccgtggat
gagctcgcgggcctcggccgcggcgacgttctggtgttcctgcccggcgagcgcgagatc
cgtcagtgcgctgaggcgctgcgcaagcatcacccgccccataccgaggtgctgcccctg
ttcgggcgcctgtccaccgccgagcagcagcgcgtgttcgcaccgcaccgtggccggcgg
atcgtcctgtccaccaacgtcgccgaaacctcgctcaccgtcccgggaatccgctatgtg
gtggacagcgggcttgcgcggatcagccgctacagctatcgcaccaaggtccagcgcctg
ccggtcgagccggtcgcacagtccagcgccgaccagcgcgccgggcgctgcgggcgtgag
gggccgggcgtgtgcatacgcctctacgacgcggccgactttgaggcgcggccgcggttt
accgatcccgaaatcctgcgcaccaatctggcctcggtcatcctgcagatgaagcatctg
cggctgggcgccatcgagcggtttcccttcatcgagccgccggatccgcgctacgtcaag
gacgggctcaagctgctcgatgaactgggcgcgctcaaccgccgccagaatctctcgcgc
ctgggtcgtcagctggcccgcctgccggtggatccgcgcatcgcgcgcatcctgctggcg
ggcgaccgcgagggtgcgctggatgagctgctggtgatcgccgccgcgctgtcggtgcag
gatccgcgtgagcggcccatggatcgacgcgaggcggccgatgccgcgcagtccgcctgg
caggacaagcgctcggattttggcggacagctgcgcctctgggccgcctatcgggagcag
gcccaccatctgagtcggcgcaaactccaggcctggtgccatgagcatttcctgtctcat
gtgcggatgcgtgagtgggcggatacccacgcccagctgcgccgcctcgtgcgggatatg
gggctcaccgaaaataccgcgccggcacgaccggtggcgatccatcgggccctgctcagc
ggctttctctccaacatcgcccggcgcgaggacggcggtgagtatgtcgggccgcgtggg
ctcaagctcgccattcatccgagctcggcggtggcgcgccagcggccgcgctggatcatg
gccgcggagcttgtcgaaaccagccgggtgttcgcccgggtggcggccgatgtgcggccg
gagtggatcgaaccgctggccgggcatctgctcaagcgccgccatcgcgatccgtggtgg
gaggccggcaggggcaaggtgttcgggcgcgaggatgccaccctctacggtctgcccatc
gtcaccggacgcaagatcgactatgcgcgtgtggccccggcggaggcccggcaggtgttc
atccgcgagggtctgctgggcgagccaccaccggatccgccggcctttctgcgggccaac
caggacctgatcgccgaggtcgagaccctcgaggcaaagacccgacgccgtgatgtgctg
gtggatcacgaggcgcttgcggccttctacgacgcggccctgccggccgcggtagtggat
ggcccgagtcttgatcgctggctgcgcgacggtggcgacgaccgtgcgctgcggctggat
cgcgatcagttgatggcccggggcgtgaccgagggggcggccgactaccccgacacattc
gatgtcaacggcgtgcgcctgccactgcgatacgcctttacgcccggtagcgaggtcgat
ggcgtcacggtctgcattccggtggcggccctcaacgcgctctcgccggagcccttcgag
tggctggtgcccggcctgctcgaggaaaaggtggtcaccctgatccgggcactgcccaag
gcgctgcgacggcattttgtgcccgtgccggattttgcccgtgcggttctcgagtcactg
cccacccgagagggatcgttagaggcggcggtgcgcgccgaactgcggcgcatgaccggg
attgatatccctggtggcctgtgggatgaactggtcctgcccggacatctgcagatgcgc
ttcgaggtgctcgatgaggccggtgcgctgctcgacagcggtcgtgatctgcccgcgctg
cagcggtcctgcgccgatcatgcggcgcgcgacttccgggcgccggccgacagcagcttc
gagcgcaccgggatcaccgactgggacatcggcacgttgccggagcgggtgcctttcgtg
cagggcgggatcgagctgcagggctatccggccctgtgtgccgaacagggcgcggtggcc
ctgcgcctgcttgacggccccgagcgcgccgccattgcccatcgcgagggcgttcgcagt
ctcctgatgaagcgcttcgcccagcaggcgcgccacctgcgccgggggctcgaggggctc
gatcgcatggccatcgactaccgcgatgtgggggacgccgatgagttcaaacgcggcttt
gtggccgcggtattcgatcaggtttttctcgccgggaccgttccgcgggaccgggccagc
tggctcgaaatctgcgagcagggccgcaccgcgatcatcccccacggtgagcagctccgg
gatcgggtctctgatatcctgtcgcgacaaaagcgggtgcgccgggcactcaagggcaat
atcccgctgggcatgatggacagctaccaggatctccgccagcagctggacgggctggtg
taccccgggtttctgctggacaccgacccggagcggctcgccgatctgccgcgctatctg
gcgggaatggcccgccggctcgagcgcctgcagcaggacccgaaccgtgacgcggccggc
ctggcggcgatccagccgcatcagcgccggctcgacgaggcgctggcccgtcatgcccga
cgggccatccgtgacccggccctggcgcaggtccggtggctggtggaggagtaccgtatc
tcgctgtttgcccaggatctgggcacccgcgagcgggtatcggaaaaacgcctggcccgc
gcctgggaagccgtgcgctga
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