Spiribacter roseus: BBH56_05975
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Entry
BBH56_05975 CDS
T06143
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sros
Spiribacter roseus
Pathway
sros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH56_05975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sros03019
]
BBH56_05975
03400 DNA repair and recombination proteins [BR:
sros03400
]
BBH56_05975
Enzymes [BR:
sros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBH56_05975
Messenger RNA biogenesis [BR:
sros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBH56_05975
DNA repair and recombination proteins [BR:
sros03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBH56_05975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AUB78688
LinkDB
All DBs
Position
1229386..1231224
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AA seq
612 aa
AA seq
DB search
MHNAMSSPPAVTEAGQILESVFGYSQFRGRQAEIIEHVINGGDALVLMPTGGGKSLCYQI
PALVRPGVAVVISPLIALMTDQVSALRQQGVRAAALNSSLPAETRAETERALQAGTIDLL
YVAPERLLNSDLMHRLSAIDVALFAIDEAHCVSQWGHDFRPEYQQLGAIGERFPHVPRLA
LTATADQRTREEIRSGLLPDDAASFVSSFDRPNIRYEVGLKERPREQLLAFIRSRHAGES
GIVYCMSRRATEQIADWLNTRGVPALAYHAGLEQTLRAHHQARFLREEGLVMVATVAFGM
GIDKPDVRFVAHLDLPKTLEAYYQETGRAGRDGLPADAWLVYGLQDIYRIRQMGAESSAG
EGHKRREKQRLEALLGFCETHECRRPTLLGHFGEHYAGRCEYCDNCQSPPRTWDAADPAR
RLLSCVYRTGQRFGAAHVIDVLLGQDNDRIRQRGHDQLSTFAIGTDLSRSTWQSVIRQLL
AHGYLEPDPEGHGGLRLNDACRPLLRGEQGLELREDLPAQRPQSRARVAASDVAMAPDTW
AALRAQRRRLAETEGVPPYVIFHDATLLAMVEQHPRSLEEFAALPGVGARKLERYGEAFL
ETLATLPDPASR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacgcgatgtcgagccccccggcggtcaccgaagccggccagatcctggaatcg
gtctttggctattcgcagttccgtggccgccaggccgaaatcatcgagcatgtcatcaat
ggcggtgacgccctggtgctgatgcccacggggggcggcaaatccctgtgctaccagatc
ccggcgctggtgcgccccggggtcgcggtggtcatttcgccgctgatcgccctgatgacc
gaccaggtcagcgccctgcgacagcagggggtacgggcggcggcgctcaattcgagcctg
cccgccgagacccgcgccgagaccgagcgcgccctgcaggccggtacgatcgatctgctg
tacgtggccccggagcggctgctgaacagcgatctgatgcatcggctgagcgccatcgac
gtggccctgttcgccatcgacgaggcgcactgcgtatcacagtgggggcatgatttccgg
cccgagtaccagcagctcggcgccatcggcgagcgcttcccccatgtcccgcggcttgcc
ctcaccgccacggcggatcagcgcacccgcgaggaaatccgcagcggactgctgcctgat
gacgccgcctcgttcgtctcgagctttgaccggcccaacatccgctacgaagtgggcctc
aaggaacggccccgggagcagctgctggcgttcatccgcagccgtcatgccggtgagtcg
gggatcgtctactgcatgtcgcggcgcgccaccgagcagatcgccgattggctgaatacc
cgtggcgtccctgcactggcctatcatgccgggcttgagcagaccctgcgcgcccaccac
caggcccggtttctgcgcgaggaagggctggtgatggtggccacggtggccttcggcatg
ggcatcgataaacccgatgtccgctttgtcgcccacctcgacctgcccaagaccctcgag
gcctactaccaggagacgggccgggccggccgcgacggcctgcccgcggatgcctggctg
gtgtatggcctgcaggacatttaccgcatccgccagatgggggccgaatccagcgccggc
gaggggcacaagcgccgcgaaaaacagcgtctggaggccctgctgggtttttgcgaaacc
cacgagtgccgacgccccaccctgctggggcattttggcgagcactatgccggacgctgc
gagtactgcgacaactgccagtcccctccgcgcacctgggacgcggcggacccggcccgc
cggctgctgtcctgcgtctatcgtaccgggcagcggttcggcgcggcccacgtcatcgac
gtgctgctgggccaggacaacgaccgcatccggcagcgcggccacgaccagctgagcacc
ttcgccatcggcaccgacctgtcacgcagcacctggcagtcagtgatccgccagctgctg
gcgcatggctacctcgaacccgacccagagggccatggcggtctgcgcctgaatgacgcg
tgtcggcccctgctgcggggggaacagggactcgagctgcgcgaggatctgcccgcccag
cggcctcagtcccgggcccgggtcgccgcatcggatgtggccatggcgccggacacctgg
gcggcgctgcgcgcccaacgccgccgactggcggaaaccgagggggttccgccctacgtc
atctttcacgatgccacgctgctcgcgatggtcgagcagcatccgcgcagtcttgaagaa
ttcgcggcactgcctggcgtcggcgcccgcaagctcgagcgctacggcgaagcctttctg
gagaccctggccacgctgcccgaccccgccagtcgctga
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